PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G235100.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 224aa    MW: 25940.4 Da    PI: 10.2032
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G235100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.46.6e-08137185248
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 
                            rWT+ E e+lv++v ++G g+W    r +     Rt  ++k++w+++l
  Sobic.001G235100.2.p 137 SRWTAKEVEILVQGVSKFGVGRWVMLKRQFFktSIRTSVNLKDKWRNLL 185
                           59*************************99998878************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-11131186IPR009057Homeodomain-like
PROSITE profilePS5129413.362131189IPR017930Myb domain
SMARTSM007172.1E-6135187IPR001005SANT/Myb domain
SuperFamilySSF466897.18E-15138211IPR009057Homeodomain-like
CDDcd116604.21E-19138186No hitNo description
PfamPF139212.6E-5139187No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MEQQAIEIYR QPLEEPELFW APIEQAEQGL YGFLGDLQLS VASGSPRGLQ IENSGARVED  60
GVLILQLLEE PQDEANLNDW LSGDLHPSPL LDTNAHYQTK CRRSGRRGTR KRRTSPWNPM  120
FFESRVSREY TSRKNNSRWT AKEVEILVQG VSKFGVGRWV MLKRQFFKTS IRTSVNLKDK  180
WRNLLKAYQG NSQKTTQLYL EPSLVEQIRK VAEKHPYPNK RHK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108113TRKRRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G235100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002467161.21e-165uncharacterized protein LOC8059304
TrEMBLA0A1Z5S7121e-164A0A1Z5S712_SORBI; Uncharacterized protein
STRINGGRMZM2G046438_P012e-94(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52252134
Representative plantOGRP16451536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.23e-16TRF-like 3