PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G235200.3.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 204aa    MW: 23467.6 Da    PI: 10.673
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G235200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.76.1e-09120168248
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 
                            rWT+ E e+lv++v ++G g+W+   + +     Rt+ ++k++w+++l
  Sobic.001G235200.3.p 120 SRWTAKEVERLVQGVSKFGVGRWTNLKQNFFkrSIRTAVNLKDKWRNLL 168
                           59***************************9988889***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.188114172IPR017930Myb domain
SMARTSM007171.9E-7118170IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-12120169IPR009057Homeodomain-like
SuperFamilySSF466894.59E-15121195IPR009057Homeodomain-like
CDDcd116602.16E-18121169No hitNo description
PfamPF002498.3E-7121168IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MLVALRSSRL LTSHHNADRA FRMEQQQAIY GFLGELQMEN YRAREEDVDV WILRLLEEGS  60
VDAANLNDCC LSGDLPAPSP SPDANDNGHT GPRKSGPRGT RKRRTSPWNS MFYTSRKNNS  120
RWTAKEVERL VQGVSKFGVG RWTNLKQNFF KRSIRTAVNL KDKWRNLLKT YQEGSQKTTQ  180
LHLEPSLVER IRKLAEKQQM QHI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199104TRKRRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G235200.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021306701.13e-71uncharacterized protein LOC110431686
TrEMBLA0A1B6QKI91e-150A0A1B6QKI9_SORBI; Uncharacterized protein
STRINGPavir.Ia01842.1.p3e-54(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.14e-19TRF-like 6