PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G235200.4.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 220aa    MW: 25362.8 Da    PI: 10.4174
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G235200.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.9e-09136184248
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 
                            rWT+ E e+lv++v ++G g+W+   + +     Rt+ ++k++w+++l
  Sobic.001G235200.4.p 136 SRWTAKEVERLVQGVSKFGVGRWTNLKQNFFkrSIRTAVNLKDKWRNLL 184
                           59***************************9988889***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.188130188IPR017930Myb domain
SMARTSM007171.9E-7134186IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-12136185IPR009057Homeodomain-like
CDDcd116601.62E-18137185No hitNo description
SuperFamilySSF466895.38E-15137211IPR009057Homeodomain-like
PfamPF002499.4E-7137184IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MLVALRSSRL LTSHHNADRA FRMEQQQAIY GFLGELQMEN YRAREEDVDV WILRLLEEGS  60
VDAANLNDCC LSGDLPAPSP SPDANDNGHV GIYRIDAELL NFNYLTGPRK SGPRGTRKRR  120
TSPWNSMFYT SRKNNSRWTA KEVERLVQGV SKFGVGRWTN LKQNFFKRSI RTAVNLKDKW  180
RNLLKTYQEG SQKTTQLHLE PSLVERIRKL AEKQQMQHI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115120TRKRRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G235200.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021306701.13e-88uncharacterized protein LOC110431686
TrEMBLA0A1B6QKJ41e-163A0A1B6QKJ4_SORBI; Uncharacterized protein
STRINGPavir.Ia01842.1.p2e-51(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.17e-19TRF-like 6