PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G235200.5.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 190aa    MW: 21972.8 Da    PI: 10.394
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G235200.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.95.4e-0999147248
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 
                            rWT+ E e+lv++v ++G g+W+   + +     Rt+ ++k++w+++l
  Sobic.001G235200.5.p  99 SRWTAKEVERLVQGVSKFGVGRWTNLKQNFFkrSIRTAVNLKDKWRNLL 147
                           59***************************9988889***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.18893151IPR017930Myb domain
SuperFamilySSF466897.18E-1495159IPR009057Homeodomain-like
SMARTSM007171.9E-797149IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-1299148IPR009057Homeodomain-like
PfamPF002497.3E-7100147IPR001005SANT/Myb domain
CDDcd116601.75E-17100148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MENYRAREED VDVWILRLLE EGSVDAANLN DCCLSGDLPA PSPSPDANDN GHVGIYRIDA  60
ELLNFNYLTG PRKSGPRGTR KRRTSPWNSM FYTSRKNNSR WTAKEVERLV QGVSKFGVGR  120
WTNLKQNFFK RSIRTAVNLK DKWRNLLKTY QVHKKLHSCI LNHRWWNGSG SWQKNNKCST  180
YRNDDLVIV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17883TRKRRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G235200.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1B6QKK61e-138A0A1B6QKK6_SORBI; Uncharacterized protein
STRINGPavir.Ia01842.1.p8e-38(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-15TRF-like 6