PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G235200.7.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 174aa    MW: 20077.6 Da    PI: 10.6376
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G235200.7.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.14.8e-0983131248
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 
                            rWT+ E e+lv++v ++G g+W+   + +     Rt+ ++k++w+++l
  Sobic.001G235200.7.p  83 SRWTAKEVERLVQGVSKFGVGRWTNLKQNFFkrSIRTAVNLKDKWRNLL 131
                           59***************************9988889***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.18877135IPR017930Myb domain
SuperFamilySSF466895.81E-1479143IPR009057Homeodomain-like
SMARTSM007171.9E-781133IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-1283132IPR009057Homeodomain-like
PfamPF002496.2E-784131IPR001005SANT/Myb domain
CDDcd116602.84E-1784132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MENYRAREED VDVWILRLLE EGSVDAANLN DCCLSGDLPA PSPSPDANDN GHTGPRKSGP  60
RGTRKRRTSP WNSMFYTSRK NNSRWTAKEV ERLVQGVSKF GVGRWTNLKQ NFFKRSIRTA  120
VNLKDKWRNL LKTYQVHKKL HSCILNHRWW NGSGSWQKNN KCSTYRNDDL VIV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16267TRKRRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G235200.7.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1B6QKK11e-126A0A1B6QKK1_SORBI; Uncharacterized protein
STRINGPavir.Ia01842.1.p9e-41(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-15TRF-like 6