PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.001G235266.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

MYB_related

Protein Properties

Length: 211aa MW: 24299.8 Da PI: 10.8172

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.001G235266.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.1	3.6e-07	119	166	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 rWT E e lv +v +lG ++W+++ r Rt ++k++w+++l Sobic.001G235266.1.p 119 RWTSLEVENLVIGVSKLGVRNWTKVKRDYFktSFRTQVNLKDKWRDLL 166 9************************9998999*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.146	112	170	IPR017930	Myb domain
SuperFamily	SSF46689	2.09E-12	114	168	IPR009057	Homeodomain-like
SMART	SM00717	5.0E-4	116	168	IPR001005	SANT/Myb domain
CDD	cd11660	1.21E-15	118	167	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.0E-9	119	167	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
LEDTSNSAFA DHESEAEQVH LYHERGDYIV VPSSLDLIPV QYGWGGHQGR RKCRKRRKSC 60 WANAESNSKV QYGWGGHHGR RKYRKKSTSC WGEISNLFDL LKPSACRGKT FGGRKKIKRW 120 TSLEVENLVI GVSKLGVRNW TKVKRDYFKT SFRTQVNLKD KWRDLLRACG IDVASKKKVQ 180 PQRATRKIVQ GLLEEKIISI HYATQNRRTP *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.001G235266.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1Z5S7K2	1e-154	A0A1Z5S7K2_SORBI; Uncharacterized protein (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5225	21	34
Representative plant	OGRP1645	15	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17460.1	1e-10	TRF-like 3

Link Out ? help Back to Top
Phytozome	Sobic.001G235266.1.p