PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G249800.1.p
Common NameSb01g022100, SORBIDRAFT_01g022100
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 491aa    MW: 53573.8 Da    PI: 8.1427
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G249800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM64.14.3e-20191762128
                   NAM   2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgk....rknra..... 77 
                           p+GfrF Pt+ el+   L +k++g++   +++ +++e+ i++++P+dL+ +++   e++ +yfFs+r+ +++ g     +k+r+     
  Sobic.001G249800.1.p  19 PKGFRFVPTQLELI-TILSHKINGRRlhPKVAGIFHELTILDHHPKDLHDMYERdkEHRYIYFFSRRQFQKTAGGggpvHKKRQrgaag 106
                           89************.77********9655566779*************84333311333569***999888854445553333345688 PP

                   NAM  78 ...............tksgyWkatgkdkevlsk...kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                                          ++ g Wk +g  + ++     +g + g   t+vfy+  ++ + +k++W mhe+++
  Sobic.001G249800.1.p 107 agqdeddneprpvrlARGGGWKPSGGGHVLHWPkdkGGFVAGKMVTMVFYDHrNNGQQVKSHWGMHEFTV 176
                           899999999988888999*******97766665554555689999*****662455667*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-228201IPR003441NAC domain
PROSITE profilePS5100522.99918203IPR003441NAC domain
PfamPF023655.6E-1219175IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MSSTTTTMED KRFTKHGFPK GFRFVPTQLE LITILSHKIN GRRLHPKVAG IFHELTILDH  60
HPKDLHDMYE RDKEHRYIYF FSRRQFQKTA GGGGPVHKKR QRGAAGAGQD EDDNEPRPVR  120
LARGGGWKPS GGGHVLHWPK DKGGFVAGKM VTMVFYDHRN NGQQVKSHWG MHEFTVPVHQ  180
QLLSEPTKTT HLHNLALYRL YRLKGDDMKS DDGAGSNQTL ANVSAAHGHF SAPCPAGQPS  240
SGILTGRNQP LATGATTSRM PPPPQLQQQQ HHIPNVGHSQ YYHHHQYAFG AAPARSAHQQ  300
VHTMAMPPPA YGTGMPGRHQ LLQFARPPST GLPGRQSFQQ FARPPAPSQM PAPAKPATYC  360
GAGQKASHSG ATRSLPWAAV STPPPAAESP SAEELAPLTA THGGAGQEAS GNLGATRSWQ  420
DATATAETDC VKLEDKEIED SIPADNYDGI GMPDYDLDLG WMLEDRFLFT MDDLCPTSDE  480
PPPTQQGDSN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G249800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021307675.10.0uncharacterized protein LOC8066147
TrEMBLA0A1Z5S7860.0A0A1Z5S786_SORBI; Uncharacterized protein
STRINGSb01g022100.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Representative plantOGRP985338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.11e-08NAC domain containing protein 36