PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G253400.1.p
Common NameSb01g022380, SORBIDRAFT_01g022380
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 269aa    MW: 30003 Da    PI: 5.4047
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G253400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2323.2e-102067355
                   AP2  3 ykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          y+G+++ + +g+W+++I    + +g   +f +g fgtaeeAa a+++a +++ g
  Sobic.001G253400.1.p 20 YRGITRLP-SGKWRSYIV---NrDG--WSFDVGEFGTAEEAALAHDRAILAILG 67
                          9*******.7******64...3233..8********************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.3E-51984IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-101978IPR001471AP2/ERF domain
PROSITE profilePS5103212.4181978IPR001471AP2/ERF domain
PfamPF008475.4E-72066IPR001471AP2/ERF domain
CDDcd000181.99E-142080No hitNo description
SuperFamilySSF541711.05E-92077IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
METKEAVATY STAPIATIEY RGITRLPSGK WRSYIVNRDG WSFDVGEFGT AEEAALAHDR  60
AILAILGPNT SAMVLNFRAA FSDIELRFLH GRHAPARPAG VIAMVQMSGD GSYDAELARF  120
SERAFDAYMD PELALDVANF RLAHGDMLQR LKEEAIAKIG TNANQVACAK VELDVERKAF  180
VEAAKNKATN KTWVETYHKR QQQTGRTFED ENRWPQILPT ANVHVDWFPG EELIYMPHGS  240
SYVDEMILGN TPIKKTKPDA CMPDDFLF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G253400.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLC5WM800.0C5WM80_SORBI; Uncharacterized protein
STRINGSb01g022380.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150581718
Representative plantOGRP1911022