PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G278500.1.p
Common NameSb01g027416, SORBIDRAFT_01g027416
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 318aa    MW: 33862.9 Da    PI: 5.4019
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G278500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH352.7e-11133179455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            h  +Er+RR+++ + f++L +++P       +K +K+++L  ++eY+++L+
  Sobic.001G278500.1.p 133 EHVVAERKRREKMHNQFATLASIVPDI-----TKTDKVSVLGSTIEYVHHLK 179
                           5899**********************7.....7*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.551129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-16133191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-9133178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.52E-12134183No hitNo description
SuperFamilySSF474591.15E-15134195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-13135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MMDSSANKQW LAELEKDDDL GELELIDPLS MQQLAESLAN ELWSQQQPPQ QEQRPTTTGF  60
SFAGVGGSAA TGVGCNNILM SFTNDGGSSS SSSTTVVGTA NNCCPPLTML PLTEKKQGTG  120
SGGGRRASSS LKEHVVAERK RREKMHNQFA TLASIVPDIT KTDKVSVLGS TIEYVHHLKD  180
RLKTLQQKKE HHHFAGSGSG TAESESPPPS DAQCCTTGTG SKDDEAVNKS DDESPKIEVD  240
VRGKTILLRV VCRQKKGVLI MVLTELIENH GLSIINTNVV PFAESSLNIT ITAQIEDGTS  300
STGELVNNIT SALNKVG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137142ERKRRE
2138143RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G278500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002467399.20.0transcription factor bHLH18
TrEMBLA0A1Z5S7Y20.0A0A1Z5S7Y2_SORBI; Uncharacterized protein
STRINGSb01g027416.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138961725
Representative plantOGRP1298245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.13e-26bHLH family protein