PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G295600.1.p
Common NameSb01g028870, SORBIDRAFT_01g028870
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 279aa    MW: 30641.6 Da    PI: 8.6375
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G295600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.61.7e-1492136347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +WT+eE+++++++ + lG+g+W+ I++ + ++Rt+ q+ s+ qky
  Sobic.001G295600.1.p  92 PWTEEEHKKFLEGLRNLGKGDWRGISKGFVTTRTATQVASHAQKY 136
                           7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.00885141IPR017930Myb domain
SuperFamilySSF466892.24E-1786141IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-1788140IPR006447Myb domain, plants
SMARTSM007171.5E-989139IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-1090135IPR009057Homeodomain-like
PfamPF002491.9E-1292136IPR001005SANT/Myb domain
CDDcd001671.88E-992137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MEEEQGRLTT MTPGVLRLFG VDVRWGDGGE PEELPMDLKK SSSMPNLTIH QPLLPPGEAG  60
DGKGYASDDA ELASGQQKRR RRKAQERKKG IPWTEEEHKK FLEGLRNLGK GDWRGISKGF  120
VTTRTATQVA SHAQKYFLRQ TNPGKKKRRA SLFDVGIADF NYMDDQVPSP QRSIVTKPAP  180
TQEIIHTDRG DVPYRGDFGE ILGNNMQVNH QLTDYYYFKK DPNVHLETSL SMASGLETAS  240
SSTNSLNLSI IAVDSLELSI APPARCGCGG LAGAIKVL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17782KRRRRK
27788KRRRRKAQERKK
37888RRRRKAQERKK
4144148KKKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.14510.0callus| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed mainly in roots, leaves, and senescent leaves at similar levels. {ECO:0000269|PubMed:12172034}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269|PubMed:12172034}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q7XC51}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G295600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002467479.10.0transcription factor MYBS2
SwissprotB8BI933e-80MYBS2_ORYSI; Transcription factor MYBS2
SwissprotQ7XC513e-80MYBS2_ORYSJ; Transcription factor MYBS2
TrEMBLC5WRH90.0C5WRH9_SORBI; Uncharacterized protein
STRINGSb01g028870.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104643043
Representative plantOGRP1453244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.12e-32MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]