PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.001G299800.1.p

Common Name

Sb01g029192, SORBIDRAFT_01g029192

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bHLH

Protein Properties

Length: 118aa MW: 13119.1 Da PI: 9.3365

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.001G299800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11	0.00078	70	99	7	36
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS CS HLH 7 erErrRRdriNsafeeLrellPk.askapsk 36 ++Er +++N+++ Lr+++Pk + ka++k Sobic.001G299800.1.p 70 MAERCCHKKLNDRLYMLRSVVPKiS-KAGNK 99 7899999****************55.66665 PP

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
MLFEEKEKIE TLQIHSLPVP PPTRLRRWPP VGCCRSTPWR MLRGAAPWGS GAGGGSGRVK 60 KKGMPSKNLM AERCCHKKLN DRLYMLRSVV PKISKAGNKE VDEDDNEEAE YLGSDPD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.001G299800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT035328	1e-49	BT035328.1 Zea mays full-length cDNA clone ZM_BFb0055J11 mRNA, complete cds.
GenBank	BT063483	1e-49	BT063483.1 Zea mays full-length cDNA clone ZM_BFc0067N10 mRNA, complete cds.
GenBank	EU974475	1e-49	EU974475.1 Zea mays clone 450274 inducer of CBF expression 2 mRNA, complete cds.
GenBank	KJ727752	1e-49	KJ727752.1 Zea mays clone pUT5693 bHLH transcription factor (bHLH175) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002464940.1	5e-82	uncharacterized protein LOC8055654
TrEMBL	C5WSD8	1e-80	C5WSD8_SORBI; Uncharacterized protein
STRING	Sb01g029192.1	2e-81	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP557	16	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.4	9e-12	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sobic.001G299800.1.p
Entrez Gene	8055654