PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G313800.1.p
Common NameSb01g030520, SORBIDRAFT_01g030520
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 275aa    MW: 29619.8 Da    PI: 10.4469
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G313800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B392.62.9e-2930129187
                           EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                           f+kv tpsdv+k++rlv+pk++ae++               gg   ++  l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L
  Sobic.001G313800.1.p  30 FEKVVTPSDVGKLNRLVIPKQHAERYfpaldasaaaaaaaaGGG--KGLVLSFEDRAGKAWRFRYSYWNSSQSYVMTKGWSRFVKEKRL 116
                           99***************************999999888877444..5678*************************************** PP

                           -TT-EEEEEE-SS CS
                    B3  75 kegDfvvFkldgr 87 
                            +gD+v+F +   
  Sobic.001G313800.1.p 117 GAGDTVLFARGAG 129
                           ********95432 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-3925131IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-3027129IPR015300DNA-binding pseudobarrel domain
CDDcd100174.70E-2728124No hitNo description
SMARTSM010193.3E-2130146IPR003340B3 DNA binding domain
PROSITE profilePS5086313.76130146IPR003340B3 DNA binding domain
PfamPF023628.0E-2730131IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEFTPAHARV VEDSERPRGG VAWVEKEHMF EKVVTPSDVG KLNRLVIPKQ HAERYFPALD  60
ASAAAAAAAA GGGKGLVLSF EDRAGKAWRF RYSYWNSSQS YVMTKGWSRF VKEKRLGAGD  120
TVLFARGAGG EGAPRGRFFI DFRRRRQDLA FLQPPLASAQ RLLPLPSVPI CPWQDYGAST  180
PAPSRHVLFL RPQVPAAVVL TSMPVHVAAS AVEATRSKRV RLFGVNLDCP PDAAEDGATV  240
TRRTASTLLQ LPSPSSSTSS STAGKDACSL DLGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-51251453113B3 domain-containing transcription factor NGA1
5os9_B5e-51251453113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G313800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269660.0KJ726966.1 Zea mays clone pUT3666 ABI3VP1 transcription factor (ABI38) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465017.10.0putative B3 domain-containing protein Os10g0537100
SwissprotQ8LNN81e-106Y1071_ORYSJ; Putative B3 domain-containing protein Os10g0537100
TrEMBLC5WUE40.0C5WUE4_SORBI; Uncharacterized protein
STRINGSb01g030520.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Representative plantOGRP1726823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.13e-47B3 family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]