PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G314900.7.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family TALE
Protein Properties Length: 470aa    MW: 50090.5 Da    PI: 9.8829
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G314900.7.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.74.7e-091992361954
                           HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  Sobic.001G314900.7.p 199 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 236
                           664459******************************88 PP
2BELL72.95.3e-24721251871
                  BELL  18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                            V++rY++y+eq+++v++sFeavag  +a  Yt+lA+++iS+hFr+L+d +a q
  Sobic.001G314900.7.p  72 LVERRYRRYREQMRAVAGSFEAVAGEQAAVAYTRLASRTISKHFRSLRDGVAAQ 125
                           49*************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.3E-66124IPR006563POX domain
PfamPF075266.5E-2072122IPR006563POX domain
PROSITE profilePS5007112.228177240IPR001356Homeobox domain
CDDcd000869.13E-13180241No hitNo description
SMARTSM003893.0E-9180244IPR001356Homeobox domain
SuperFamilySSF466891.11E-17181248IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-28183246IPR009057Homeodomain-like
PfamPF059205.8E-18197236IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MRRVLAVALS ILVASAQWKS YVWPCAVPLP GAAAKVRATA SSLPTLPALR LLRFLFLPRR  60
RCYLRLPPLS LLVERRYRRY REQMRAVAGS FEAVAGEQAA VAYTRLASRT ISKHFRSLRD  120
GVAAQMQVVR RALGEKDADG GVPAAGGMVK GETTPRLRVI DQCLRQHRAY QAGVLESQPW  180
RPQRGLPERA VSILRAWLFE HFLHPYPSDV DKHILARQTG LSRSQVSNWF INARVRLWKP  240
MVEEMYSEEM KDPQEGGGGA ACSNANNNSV NTSSYTSELG QQQLGHGGGA SGVDGRGGER  300
KPTRAQLLVH DAGSLASVVS IGSSSRDQQQ QMSSINFGMM DHLDFDAYND DPTAAGPGGP  360
AGGFGAGGSG GVSLTLGLQH QHADDPHGGV NIAFAGAAPS AAHEFLFMAG GGEQQMVAGG  420
AVHPSHGHGH GHHGQFSAAG MQGDGVPSSH YHRGLSAATG FQLLHDLAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5bng_A2e-17186244159Homeobox protein Meis2
5bng_B2e-17186244159Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.1290.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G314900.7.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570600.0EU957060.1 Zea mays clone 1581614 bell-like homeodomain protein 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465020.10.0homeobox protein BEL1 homolog
RefseqXP_021305140.10.0homeobox protein BEL1 homolog
RefseqXP_021305141.10.0homeobox protein BEL1 homolog
TrEMBLA0A1Z5S8K30.0A0A1Z5S8K3_SORBI; Uncharacterized protein
STRINGSb01g030620.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.23e-69BEL1-like homeodomain 2