PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.001G328500.1.p

Common Name

Sb01g031790, SORBIDRAFT_01g031790

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

LBD

Protein Properties

Length: 236aa MW: 23700.9 Da PI: 7.9943

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.001G328500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	92.4	5.3e-29	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +C++C+vlr++C++ Cvl+p++ +++q +++ +v+k+FG++ +l++++a+p+ +r+++++sl+yeA r+ +Pv+Gavg++ +++ Sobic.001G328500.1.p 2 SCNGCRVLRKGCSEACVLRPCLqwidaADAQGHATVFVAKFFGRAGLLSFISAVPDAQRPALFQSLLYEAAGRTINPVHGAVGLLGTGN 90 6*******************9998656778***************************************************** PP DUF260 85 qqleqlkaelall 97 ++l+q++++++l+ Sobic.001G328500.1.p 91 WHLCQAAVDTVLR 103 ****9998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.853	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-24	2	100	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0060776	Biological Process	simple leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MSCNGCRVLR KGCSEACVLR PCLQWIDAAD AQGHATVFVA KFFGRAGLLS FISAVPDAQR 60 PALFQSLLYE AAGRTINPVH GAVGLLGTGN WHLCQAAVDT VLRGGAIGPL PELGITGSAG 120 DLYGPPGAGT GHGGGGGKRA GGWSTFSTAK RVRKAAATGA PPPPPAAEPE ASCDLGLCLL 180 SPGSPPPPAG DRRAPFMRPG TPSITSDDDS VTTTTTTTTT GGGGDREPVL LNLFA*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.001G328500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP097640	1e-149	FP097640.1 Phyllostachys edulis cDNA clone: bphyem213i10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002465083.1	1e-167	LOB domain-containing protein 37
Swissprot	Q9FN11	3e-67	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	C5WVK7	1e-166	C5WVK7_SORBI; Uncharacterized protein
STRING	Sb01g031790.1	1e-166	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4084	36	75
Representative plant	OGRP403	16	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	8e-69	LOB domain-containing protein 37

Link Out ? help Back to Top
Phytozome	Sobic.001G328500.1.p
Entrez Gene	8063213

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]