PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G349700.1.p
Common NameSb01g033470, SORBIDRAFT_01g033470
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 315aa    MW: 33736.6 Da    PI: 4.6916
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G349700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.70.000472633021054
                           HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           +rRR+ri +  + Lr ++P      +k  +  ++L +A+ Y+++L
  Sobic.001G349700.1.p 263 KRRRERIQETVAALRNIVPGG---IAK--DATAVLDEAICYLQYL 302
                           9******************97...333..3458999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.788253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-6263310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-7263309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MGDKVNPWCH WHNPPWKFNT EGSGGNLRPP DVGLVNTNSV ALPAYLNTVA APVPFFTASI  60
AERPLSIAPR YATTLAPSLE LPALYPSRKR PLVFYQKENH APSAAPLLSK GPLDPVPELQ  120
GSNETNVTDV GAEETEGIHE NSDEINALLD SDSDEGYEKL QELDRVRRQS AAENDTLSVE  180
SVGSAGAAAG SAPPAKKRRL SSCTDKSVVD TASSARPDHS IEQKLLVNDC DAQSCCVGEV  240
ESDHKFSLGE VEAAEGDSPD DQKRRRERIQ ETVAALRNIV PGGIAKDATA VLDEAICYLQ  300
YLKLKVKTLG AVSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G349700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021306444.10.0transcription factor bHLH144
TrEMBLC5WXP20.0C5WXP2_SORBI; Uncharacterized protein
STRINGSb01g033470.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100311820
Representative plantOGRP1276534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.11e-10root hair defective 6-like 4