PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G350300.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 243aa    MW: 26063.2 Da    PI: 10.3464
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G350300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH231.4e-074797554
                          HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS
                   HLH  5 hnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54
                           +e+Er+RR +++s   +L +l+Pk   + +sk  ++    L  A  YI++L
  Sobic.001G350300.2.p 47 RKEIERNRRLHMKSLCLKLASLIPKeE-HCSSKDaMTQLGCLDDAAAYIRKL 97
                          589**********************65.4455556***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.8074297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-847107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-1147111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-54897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.001348103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MNTNNKTNSR SGGGTTGRRS RSRSNSNNAS TGTATTTTAA AAAAMERKEI ERNRRLHMKS  60
LCLKLASLIP KEEHCSSKDA MTQLGCLDDA AAYIRKLKAR VDELQRAQLS LSNKRGEDYD  120
GAVRTTTSSS GTATGLSSSE AAAGVAAEPA AVVEVRHSHD GSSLEVVLIS SVRRPFKLHQ  180
VATVLEEEGA EIISANVSVD GRRMFHTIHS RAFSSRIGID VSRVSERLRA LDLLLDRSLV  240
RD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G350300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465183.21e-166transcription factor bHLH168 isoform X1
TrEMBLA0A1Z5S9901e-172A0A1Z5S990_SORBI; Uncharacterized protein
STRINGSb01g033530.11e-132(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Representative plantOGRP13451147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.17e-12bHLH family protein