PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G351700.1.p
Common NameSb01g033650, SORBIDRAFT_01g033650
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family CAMTA
Protein Properties Length: 1025aa    MW: 114400 Da    PI: 6.2374
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G351700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1178.49.1e-56211373118
                  CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 
                           +e +krwl+++ei++iL n++ +++++e+++ p+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLK g+++vl+cyYah+ee
  Sobic.001G351700.1.p  21 QEaQKRWLRPTEICEILSNYKLFSIAAEPPNMPRSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKAGSIDVLHCYYAHGEE 109
                           5559************************************************************************************* PP

                  CG-1  91 nptfqrrcywlLeeelekivlvhylevk 118
                           n++fqrr+ywlLee++++ivlvhylevk
  Sobic.001G351700.1.p 110 NENFQRRTYWLLEEDFTHIVLVHYLEVK 137
                           *************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143779.47916142IPR005559CG-1 DNA-binding domain
SMARTSM010761.7E-7619137IPR005559CG-1 DNA-binding domain
PfamPF038593.7E-4922136IPR005559CG-1 DNA-binding domain
CDDcd001020.00168442530No hitNo description
Gene3DG3DSA:2.60.40.105.1E-9442530IPR013783Immunoglobulin-like fold
PfamPF018337.6E-8443526IPR002909IPT domain
SuperFamilySSF812962.8E-18443529IPR014756Immunoglobulin E-set
SuperFamilySSF484038.86E-15621735IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.209.1E-16630736IPR020683Ankyrin repeat-containing domain
CDDcd002044.31E-12635733No hitNo description
PROSITE profilePS5029717.237641735IPR020683Ankyrin repeat-containing domain
PfamPF127961.2E-6649736IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.286674706IPR002110Ankyrin repeat
SMARTSM002480.076674703IPR002110Ankyrin repeat
SMARTSM00248970713742IPR002110Ankyrin repeat
SuperFamilySSF525404.51E-8843898IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.045847869IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.791848877IPR000048IQ motif, EF-hand binding site
PfamPF006120.0055849868IPR000048IQ motif, EF-hand binding site
SMARTSM000150.012870892IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.249871895IPR000048IQ motif, EF-hand binding site
PfamPF006125.4E-4873892IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1025 aa     Download sequence    Send to blast
MADARKFVLP GQPPDISQIL QEAQKRWLRP TEICEILSNY KLFSIAAEPP NMPRSGSLFL  60
FDRKVLRYFR KDGHNWRKKK DGKTVKEAHE KLKAGSIDVL HCYYAHGEEN ENFQRRTYWL  120
LEEDFTHIVL VHYLEVKGCK QSFNRVKEEF MQLSNVDSPS CSNSITSQNQ MGPQNMEADE  180
SPISGQISEY EDTESDNCRA SSRYHPLAEM QQLVDGVITE NMLYPSASTV DSRQGYHGEM  240
LPITDNLDSR SFSHHDIARM LDGANIGLSD VSSTPFDSVP FNEPFTNYSA GFREPTLHSS  300
FACLEANNLD DSSCLQTFTS EALYTNHLSQ KEADALGFTG ILTSEVNGDR YNDDSIKHPL  360
LKQSSLDLLT IETPGLKKHD SFSRWMSKEL EEVVDLGIKS TSDAFWSSIE TVKVPDGSNV  420
LSNEQLGAYV VSPSLSQDQL FSILDVSPSC AYIGTNTKVS VTGTFLVNKE HVENQKWSCM  480
FGDVEVPAEV LTDGTLRCYA PAHQSGRVPF YVTCSNRVAC SEVREFEYRD SDAQYMETSR  540
SQANGVNEMH LHIRLEKLLT LGPDDHHMLA ISSGNEKYEI VNAINALMLD GKWSNQESSV  600
KEVVSTARGQ SIKKLVKEKL HQWLICKVND DGKGPNVLCK EGQGVIHLVA ALDYDWAIRP  660
IMVAGVNVNF RDAHGWTALH WAASLGRERT VSVLIANGAA AGALTDPTSE FPSGRSPADL  720
ASVNGHKGIA GFLAESALTS HLSALTIRES NDSTVEVCGL PVAEDLTGTD SAQLAGEGPH  780
AESLEGSLSA VRKSTQAAAR IFQAFRVESF HRKKVVEYGD DDCGLSDERT LSLVSLKNVK  840
PGQHDTHLHS AAVRIQNKFR GWKGRKEFMI IRQRIVKLQA HVRGHQVRKN YRKVVWSVGI  900
VEKVILRWRR KRPGLRNFQP QKQLEGPSQI QPAKAEDEYD FLHDGRRQAE ARLQRALARV  960
HSMSQYPEAR EQYHRLTTCV AEMKQSRMMQ DEMLSEAAGG GVDDFMAGLE DLICIDDAAM  1020
SAIW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.37440.0leaf| panicle
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G351700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570630.0EU957063.1 Zea mays clone 1581734 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002467764.10.0calmodulin-binding transcription activator 3 isoform X2
TrEMBLC5WXQ80.0C5WXQ8_SORBI; Uncharacterized protein
STRINGSb01g033650.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Representative plantOGRP5621565
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.20.0ethylene induced calmodulin binding protein