PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.001G359800.1.p

Common Name

Sb01g034370, SORBIDRAFT_01g034370

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

GeBP

Protein Properties

Length: 378aa MW: 40142.1 Da PI: 6.0043

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.001G359800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	103	2.5e-32	59	158	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdq 86 lfqrlw++eDeiv+L+++ +f+a++g+ +++ d++ fye ++++++ ++k+qlveKirrLK+K++++v++ + g ++f+++h+q Sobic.001G359800.1.p 59 LFQRLWTDEDEIVILRAFAEFTAQRGTsfASHQyDTTPFYEDMRRRLNTGFTKNQLVEKIRRLKRKYRNCVERlRVAGAGFTFRSPHEQ 147 79***********************8867778***********************************88899******* PP DUF573 87 kifelskkiWg 97 ife+++ iW+ Sobic.001G359800.1.p 148 AIFEIARTIWR 158 ********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	5.9E-30	60	157	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MVSSSFPDAD AYGNGDSDDL DFPVDPNPNP VFSSSPVAAP AAAAPASGSG AGAGERRPLF 60 QRLWTDEDEI VILRAFAEFT AQRGTSFASH QYDTTPFYED MRRRLNTGFT KNQLVEKIRR 120 LKRKYRNCVE RLRVAGAGFT FRSPHEQAIF EIARTIWRPA SDKHGRDSDD EGGGVAHDGH 180 FAIAPFGIDV AAAAAANGES AKSPTSRPRR GRRRRTGDFP ADAVTETLAL PPAPMQMPVM 240 TEDALPSFPQ VTAASVMDGG GCGLSVDPPS GLPGALSAAA AATAVSGSST AENPILAAMF 300 KEMVRAMLTV GGGGSTALLG LEPPPPIAGV PMEGEKWRQQ RIRELEVYLR RIDLLQDQAR 360 AALEELRSAP HAGGMNT*

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MVSSSFPDAD AYGNGDSDDL DFPVDPNPNP VFSSSPVAAP AAAAPASGSG AGAGERRPLF  60
QRLWTDEDEI VILRAFAEFT AQRGTSFASH QYDTTPFYED MRRRLNTGFT KNQLVEKIRR  120
LKRKYRNCVE RLRVAGAGFT FRSPHEQAIF EIARTIWRPA SDKHGRDSDD EGGGVAHDGH  180
FAIAPFGIDV AAAAAANGES AKSPTSRPRR GRRRRTGDFP ADAVTETLAL PPAPMQMPVM  240
TEDALPSFPQ VTAASVMDGG GCGLSVDPPS GLPGALSAAA AATAVSGSST AENPILAAMF  300
KEMVRAMLTV GGGGSTALLG LEPPPPIAGV PMEGEKWRQQ RIRELEVYLR RIDLLQDQAR  360
AALEELRSAP HAGGMNT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.001G359800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT087680	0.0	BT087680.1 Zea mays full-length cDNA clone ZM_BFb0156A22 mRNA, complete cds.
GenBank	EU954230	0.0	EU954230.1 Zea mays clone 1459363 hypothetical protein mRNA, complete cds.
GenBank	JX428520	0.0	JX428520.1 Zea mays subsp. mays clone pUT3119 GBP18 GeBP type transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002465220.1	0.0	probable transcription factor At5g28040
TrEMBL	C5WYP9	0.0	C5WYP9_SORBI; Uncharacterized protein
STRING	Sb01g034370.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP974	37	123
Representative plant	OGRP3184	10	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	4e-32	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Sobic.001G359800.1.p
Entrez Gene	8080773