PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G385800.1.p
Common NameSb01g036560, SORBIDRAFT_01g036560
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 381aa    MW: 41073.3 Da    PI: 9.0345
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G385800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.91.9e-5391361128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lppGfrFhPtdeel+ +yL++++++ ++++  +i++vdiyk++PwdLp++++ ++kewyfFs+rd+ky++g r+nra+ sgyWkatg+d
  Sobic.001G385800.1.p   9 LPPGFRFHPTDEELILHYLRNRAANVPCPV-AIIADVDIYKFDPWDLPSRAAYGDKEWYFFSPRDRKYPNGIRPNRAAGSGYWKATGTD 96 
                           79****************************.88***************888889*********************************** PP

                   NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           k++ s+ +ge vg+kk Lvfy+gr pkg+kt+W+mheyrl
  Sobic.001G385800.1.p  97 KPIQSSaTGESVGVKKALVFYRGRPPKGTKTNWIMHEYRL 136
                           ****9988999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-644169IPR003441NAC domain
PROSITE profilePS5100561.5659169IPR003441NAC domain
PfamPF023651.7E-2710136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MIMANPDMLP PGFRFHPTDE ELILHYLRNR AANVPCPVAI IADVDIYKFD PWDLPSRAAY  60
GDKEWYFFSP RDRKYPNGIR PNRAAGSGYW KATGTDKPIQ SSATGESVGV KKALVFYRGR  120
PPKGTKTNWI MHEYRLAADA HAAHTYRPMQ FRNASMRLDD SVLCRIYKKA SHAPSMAVPP  180
LSDHEQDEPA CGGGGFDDNP YAATSAAMIL QGASFPAMHA APAGAPQRMP RIPSLSELLF  240
SDPYFFEEGG MQQDMARLSN HHHQQQAPLL GRPITSQLLV NNGNSMMSGG GQIPQLDPPP  300
ASTSAAGDGA AGNKRKRSSA ETSTASASLL SSQQQASAGK KPNGSCFGAT TTFQIGNGLQ  360
LQGSSLGHQM LLHSSNMGMN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-72917320172NAC domain-containing protein 19
3swm_B2e-72917320172NAC domain-containing protein 19
3swm_C2e-72917320172NAC domain-containing protein 19
3swm_D2e-72917320172NAC domain-containing protein 19
3swp_A2e-72917320172NAC domain-containing protein 19
3swp_B2e-72917320172NAC domain-containing protein 19
3swp_C2e-72917320172NAC domain-containing protein 19
3swp_D2e-72917320172NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.88810.0callus| shoot
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G385800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280290.0KJ728029.1 Zea mays clone pUT6168 NAC transcription factor (NAC44) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465328.10.0NAC transcription factor 29
TrEMBLC5X1P90.0C5X1P9_SORBI; NAC16
STRINGSb01g036560.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-82NAC-like, activated by AP3/PI