PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G386000.1.p
Common NameSb01g036590, SORBIDRAFT_01g036590
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 357aa    MW: 39248.4 Da    PI: 6.2511
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G386000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.68.3e-56231501129
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lppGfrFhPtdee++++yL++k+ ++++    vi evd++k+ePwdLp ++k +ekewyfF+++d+ky+tg+r+nrat++gyWkatgkd
  Sobic.001G386000.1.p  23 LPPGFRFHPTDEEIISHYLTHKALNHRFIS-GVIGEVDLNKCEPWDLPGRAKMGEKEWYFFCHKDRKYPTGTRTNRATETGYWKATGKD 110
                           79*************************766.89***************99999************************************ PP

                   NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                           ke+++ +g lvg+kktLvfy+grap+gekt Wvmhe+rle
  Sobic.001G386000.1.p 111 KEIFRGRGILVGMKKTLVFYRGRAPRGEKTGWVMHEFRLE 150
                           *************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-6418173IPR003441NAC domain
PROSITE profilePS5100559.13523173IPR003441NAC domain
PfamPF023651.8E-2824149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MSEVSVINQA EVEDAGAAGQ LDLPPGFRFH PTDEEIISHY LTHKALNHRF ISGVIGEVDL  60
NKCEPWDLPG RAKMGEKEWY FFCHKDRKYP TGTRTNRATE TGYWKATGKD KEIFRGRGIL  120
VGMKKTLVFY RGRAPRGEKT GWVMHEFRLE GKLPQPLPRS AKDEWAVCKV FNKELAARTE  180
PMAAAVAGAE LERVGSLGFL NELLDSAELP ALIGADVDEV IDFKGPASTS GLHAGAPGTS  240
YLPVKMEEHA LLQQMQYQQQ PPPMFYSSQY FSLPAMNSGD LPPAIRRYCK AEQQVVSSGQ  300
TASVVSPSRE TGLSTDRNAA GGGYAEISSA VTPSSSHQFL PELDDPVLNL ADLWKY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-54171749169Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.70630.0ovary| panicle| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G386000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9563950.0EU956395.1 Zea mays clone 1562064 GRAB2 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465330.10.0NAC domain-containing protein 79
TrEMBLC5X1Q20.0C5X1Q2_SORBI; Uncharacterized protein
STRINGSb01g036590.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.17e-96Arabidopsis NAC domain containing protein 87