PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.001G386600.1.p

Common Name

Sb01g036670, SORBIDRAFT_01g036670

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

WOX

Protein Properties

Length: 315aa MW: 32044.6 Da PI: 8.0374

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.001G386600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	47.7	2.7e-15	36	96	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ Sobic.001G386600.1.p 36 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLerfgAVGDANVFYWFQNRRSRSRR 96 89***************99***********************************997 PP
2	Wus_type_Homeobox	106.9	1.2e-34	35	98	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++q Sobic.001G386600.1.p 35 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQNRRSRSRRRQ 98 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.12E-14	31	104	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.256	32	97	IPR001356	Homeobox domain
SMART	SM00389	1.2E-6	34	101	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	8.9E-9	36	103	IPR009057	Homeodomain-like
Pfam	PF00046	5.0E-13	36	96	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MEGSSNSPDR QSSGGSPEER GSGGSGGRGG TGEPVRSRWT PKPEQILILE SIFNSGMVNP 60 PKDETVRIRK LLERFGAVGD ANVFYWFQNR RSRSRRRQRQ MQAAAAAAAA AAAANSAPAA 120 SATAGGLPSG ALQYPLAMGG GTACQYEQQA SSSSSSGSTT GGSSLGQFAL GAGVPGTGGG 180 GYFQASCGAS SPLATGLMGD VDSSSGGSDD LFAISRQMGF AATSPVASAS VAPPSTTAHQ 240 QPYYSCQSPA ATITVFINGV PMEVPRGPID LRAMFGQDVM LVHSTGALLP VNDYGILTQS 300 LQMGESYFLV ARPT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.001G386600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ728413	0.0	KJ728413.1 Zea mays clone pUT6718 HB transcription factor (HB130) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002465335.2	0.0	WUSCHEL-related homeobox 6
Swissprot	Q10M29	1e-107	WOX6_ORYSJ; WUSCHEL-related homeobox 6
TrEMBL	A0A1B6QNI1	0.0	A0A1B6QNI1_SORBI; Uncharacterized protein
STRING	Sb01g036670.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1078	37	109
Representative plant	OGRP12771	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17810.2	7e-29	WUSCHEL related homeobox 12

Link Out ? help Back to Top
Phytozome	Sobic.001G386600.1.p
Entrez Gene	8084565

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]