PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G388300.3.p
Common NameSb01g036810, SORBIDRAFT_01g036810
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 221aa    MW: 23296.9 Da    PI: 9.5303
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G388300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.92.5e-14174216547
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 
                           +r +r++kNRe+A rsR+RK+a++ eLe+k+ +Le+eN++L+ 
  Sobic.001G388300.3.p 174 RRKKRMIKNRESAARSRARKQAYTNELENKISQLEEENERLRR 216
                           799**************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.0016170217IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.725172216IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.06E-10174216No hitNo description
CDDcd147074.39E-22174216No hitNo description
Gene3DG3DSA:1.20.5.1702.8E-13174216No hitNo description
PfamPF001701.6E-11174216IPR004827Basic-leucine zipper domain
PROSITE patternPS000360177192IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MGAEAMSSHG SRVGGGGGAL SRQGSVCSLT FSEVEGQLHG VNLDDLLRSG RKTADEVWRD  60
IQGAAAAAAA CPRAQMTLED FLSRGGGPPA DAAADTDTGS GARGWAQQLY QPAPAPAPLE  120
LGRHHPAVGR PVPRPLGAGA GPVLDALYHD GQDAVAGAKR VAGEGGVAER SNERRKKRMI  180
KNRESAARSR ARKQAYTNEL ENKISQLEEE NERLRRHKYM *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G388300.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3614233e-42AK361423.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1140E18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465343.21e-156ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBLA0A1Z5S9T51e-157A0A1Z5S9T5_SORBI; Uncharacterized protein
STRINGSb01g036810.11e-152(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56850.15e-22ABA-responsive element binding protein 3