PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.001G396400.1.p

Common Name

Sb01g037520, SORBIDRAFT_01g037520

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bZIP

Protein Properties

Length: 177aa MW: 19273.2 Da PI: 8.5395

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.001G396400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.5	1.6e-09	21	79	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +r r+ +NR++Ar+sR ++++ ++ L+ + + L eN+a++ + ++ +l++e+ Sobic.001G396400.1.p 21 RRRNRMTSNRLSARKSRMKRQQHVDDLTAENERLRRENEAMRASVGDVLTQSRALEQEN 79 6888**************************************99988888888888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.2E-9	16	77	No hit	No description
SMART	SM00338	3.2E-12	17	81	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.53	19	82	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.2E-7	20	79	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.69E-8	21	75	No hit	No description
CDD	cd14702	2.27E-15	22	73	No hit	No description
PROSITE pattern	PS00036	0	25	39	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MVPPAGGQGA RGAAVTTDEE RRRNRMTSNR LSARKSRMKR QQHVDDLTAE NERLRRENEA 60 MRASVGDVLT QSRALEQENR VLAAHARQLC AALLLRNSQL RLLGDVAGVP LDVPGVPDHL 120 VQLYGGVQMP VTPLSPSVTP LSPSPPPPPL QLQLPLEIQL MLLQPDVMDA VGMLEF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.001G396400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ728266	0.0	KJ728266.1 Zea mays clone pUT6543 bZIP transcription factor (bZIP24) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002467983.1	1e-122	ocs element-binding factor 1
TrEMBL	C5WMH5	1e-120	C5WMH5_SORBI; Uncharacterized protein
STRING	Sb01g037520.1	1e-121	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12504	28	37
Representative plant	OGRP11972	4	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G62420.1	9e-12	basic region/leucine zipper motif 53

Link Out ? help Back to Top
Phytozome	Sobic.001G396400.1.p
Entrez Gene	8081082