PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G399600.1.p
Common NameSb01g037830, SORBIDRAFT_01g037830
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C3H
Protein Properties Length: 443aa    MW: 47009.3 Da    PI: 8.1649
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G399600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH322.1e-10373397227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           ktelC+ + r G C+y +rC+FaHg+
  Sobic.001G399600.1.p 373 KTELCNKWER-GACPYDGRCRFAHGM 397
                           9*********.*************95 PP
2zf-CCCH216.1e-07409434126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           ykt +C+ fa++  C+yG rC+F H+
  Sobic.001G399600.1.p 409 YKTLPCQLFAAGSGCPYGHRCHFRHS 434
                           9**********99**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.1E-14368403IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.446371398IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-8371402IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-6371397IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-8373397IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-10404434IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-7405435IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.375408436IPR000571Zinc finger, CCCH-type
SMARTSM003560.0019408435IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-4409434IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MEGDLAFFSP LRPSRLSFEG RDGRGFGSPT WASQLGTLRD SSPSSCVSDG RGGGNGRSGF  60
SSPTWGSPLE TLFNAPSSCV SDRHVGGNGS GFSSPTWGST LETLFNSPSS RVSDSPGAGN  120
GSMFSTPKQA SPLETLLNSP SSSSCVTDSR GSVTGSVSGT AKMALPLETL LNSPSSSISD  180
SRGGGSGSGF STTKKASPLE PLLNSPSSSV SDSRVCGNRS SPGISKERDS EQVKKAESLL  240
RAITERYENC FFRLRDTTAE LADLRLERVR LGAENLHLSL LLEELDAAEQ SKQASAVVLT  300
PPPKPAQAEA ASTPKSISIR SKGFLSKNQP QGVATPQRLR VRASQAMEDA GEKEKEKDDG  360
EVEVDAFRQG AMKTELCNKW ERGACPYDGR CRFAHGMEEL RPVIRHPRYK TLPCQLFAAG  420
SGCPYGHRCH FRHSMAPTAE SC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-16373434567Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G399600.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1186684e-77AC118668.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0036G02, from chromosome 3, complete sequence.
GenBankAC1372674e-77AC137267.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence.
GenBankAP0149594e-77AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126114e-77CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002467999.10.0putative zinc finger CCCH domain-containing protein 21
SwissprotQ10MN81e-119C3H21_ORYSJ; Putative zinc finger CCCH domain-containing protein 21
TrEMBLA0A1Z5S9Z40.0A0A1Z5S9Z4_SORBI; Uncharacterized protein
STRINGSb01g037830.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121433235
Representative plantOGRP20581636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-34C3H family protein