PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G405150.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family Trihelix
Protein Properties Length: 261aa    MW: 27737.5 Da    PI: 11.0551
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G405150.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix26.51.7e-082295270
              trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekk 70
                          W++ e+ aL++a   ++ r r g+l+ ++W++ ++++     +++   r+  qCk++++ l+kr ++++ + k+
  Sobic.001G405150.1.p 22 WSDGETSALLDAWGPRHLRARGGALRPADWRACADAVtsrraAAGRAPRTVDQCKNRLDYLKKRLRAERSRPKG 95
                          *************************************9999888889*******************99988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-132197No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MSSSSSRRRP PPPPPAWTPE PWSDGETSAL LDAWGPRHLR ARGGALRPAD WRACADAVTS  60
RRAAAGRAPR TVDQCKNRLD YLKKRLRAER SRPKGAPPTP PPVSGWLDRL RALLHLAPSA  120
PPGFAHRLRA KTTKVQVKED DDEKASGGAP LPRCWPPVPK RPRTAVALSP LSAASGDHPG  180
GGGKSCTGVA AALDRLAGTY ERVEAAKQRE ATRLEERRLE AMRDLEIERM RLLVDVAVTA  240
SVGVDGAAAA AAATTAGGDF *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G405150.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002488979.20.0trihelix transcription factor ASIL2
TrEMBLA0A1Z5SA001e-180A0A1Z5SA00_SORBI; Uncharacterized protein
STRINGGRMZM2G452695_P011e-127(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140221313
Representative plantOGRP1277422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.11e-13sequence-specific DNA binding transcription factors