PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.001G405200.1.p

Common Name

Sb01g038330, SORBIDRAFT_01g038330

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

Trihelix

Protein Properties

Length: 206aa MW: 22681.9 Da PI: 10.7079

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.001G405200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	26.7	1.5e-08	19	87	2	64
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykki 64 W++ e+ Li+a ++ r r + l+ W++ ++++ + r f+r+ +qC+ + + l++ryk++ Sobic.001G405200.1.p 19 WSDGETARLIDAWGPVHLRRRPRGLRLEEWRAAARAVnahraaAGRRFNRTRVQCQTRVRTLKQRYKEE 87 **************************************9999999******************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.7E-16	18	104	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MNVCARSFPP PPESASGNWS DGETARLIDA WGPVHLRRRP RGLRLEEWRA AARAVNAHRA 60 AAGRRFNRTR VQCQTRVRTL KQRYKEELLK QPPSGWRHLP RLHAFLASPD DDSPPGIPAG 120 EPAVDAKQEV AEEAAGGGIG LADRWSVPRR PRNAAAGTGF CPGAVVVKLV EVYERVELAR 180 IAAEKVKMEM QQAQKAMIDA VKMEQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.001G405200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002468028.1	1e-140	trihelix transcription factor ASIL1
TrEMBL	A0A1Z5SAJ2	1e-146	A0A1Z5SAJ2_SORBI; Uncharacterized protein
STRING	Sb01g038330.1	1e-140	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14753	12	13
Representative plant	OGRP14124	2	2

Link Out ? help Back to Top
Phytozome	Sobic.001G405200.1.p
Entrez Gene	8084713