PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G416200.1.p
Common NameSb01g039190, SORBIDRAFT_01g039190
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 198aa    MW: 20881.6 Da    PI: 7.009
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G416200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.00175880123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          ++C+ C++ F++   L  H  +H
  Sobic.001G416200.1.p 58 FECKTCNRQFPSFQALGGHRASH 80
                          89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.91E-856125No hitNo description
PfamPF139123.4E-135782IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8275885IPR007087Zinc finger, C2H2
SMARTSM003550.165880IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
PfamPF139125.0E-9102127IPR007087Zinc finger, C2H2
PROSITE profilePS501578.85103130IPR007087Zinc finger, C2H2
SMARTSM003554.8103125IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006979Biological Processresponse to oxidative stress
GO:0009408Biological Processresponse to heat
GO:0009611Biological Processresponse to wounding
GO:0009631Biological Processcold acclimation
GO:0009643Biological Processphotosynthetic acclimation
GO:0010200Biological Processresponse to chitin
GO:0010224Biological Processresponse to UV-B
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MAYGKRTRQK AEEMVWLPDG ADVARFLLLF SGDHQHHYHG AGGVASTDAA SSAPERVFEC  60
KTCNRQFPSF QALGGHRASH KKPRLADGGV DAAAAEPPKP KVHGCSICGL EFAIGQALGG  120
HMRRHRAADQ ADGGSPGLGL GLSLGTGLLA PKDDSGKKTA PPAELVLDLN AVPELEEEQD  180
RARLSIEFPV AVVDFLR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G416200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465455.11e-142zinc finger protein ZAT12
TrEMBLC5WPB81e-140C5WPB8_SORBI; Uncharacterized protein
STRINGSb01g039190.11e-141(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.12e-26C2H2 family protein