PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G428700.1.p
Common NameSb01g040280, SORBIDRAFT_01g040280
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 247aa    MW: 25480 Da    PI: 4.924
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G428700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-183887255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           ykGVr ++ +g+Wv+eIr p   ++++r++lg++ t+e Aa+a++aa ++l+g
  Sobic.001G428700.1.p 38 PYKGVRMRS-WGSWVSEIRAP---NQKRRIWLGSYATPEAAARAYDAALLCLKG 87
                          59****998.**********9...336************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.4E-293896IPR001471AP2/ERF domain
PROSITE profilePS5103221.9973895IPR001471AP2/ERF domain
SMARTSM003802.7E-3538101IPR001471AP2/ERF domain
PRINTSPR003675.6E-83950IPR001471AP2/ERF domain
CDDcd000181.00E-183995No hitNo description
SuperFamilySSF541711.7E-193996IPR016177DNA-binding domain
PfamPF008471.3E-113987IPR001471AP2/ERF domain
PRINTSPR003675.6E-86177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MVKNPGSNGV LTATAFSDNK LARPESGVVG NGKAAARPYK GVRMRSWGSW VSEIRAPNQK  60
RRIWLGSYAT PEAAARAYDA ALLCLKGSDA VLNFPATSTS SSASASSSHR RADKDDDPAA  120
GGGMSPRSIQ RAAAAAAAAI DADAGGISAD DRCSSSACAM TPTSASLSST QGSSDHVRQE  180
QHATTTSPAA ASTGSPPEGE ELWTDLEAFA SPKFMDLVDT GAAAPFSSTW EEPEDDGELM  240
RLWSFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-12391031580Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G428700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276600.0KJ727660.1 Zea mays clone pUT5587 AP2-EREBP transcription factor (EREB173) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465511.11e-178ethylene-responsive transcription factor ERF014
TrEMBLC5WQ671e-176C5WQ67_SORBI; Uncharacterized protein
STRINGSb01g040280.11e-177(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108303040
Representative plantOGRP1277745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.11e-21ERF family protein