PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G433000.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 542aa    MW: 60815.7 Da    PI: 9.0438
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G433000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR188.59.8e-2870160188
                  FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                           +fY++YA+++GF++r+s+ ++s+r++++++r+ vCskeg++e++  +   +e+++++ra tr+gCka++ +kk + gkw+vtk++++Hn
  Sobic.001G433000.2.p  70 DFYSTYARSAGFRIRISRYTRSRRDNSVISRRIVCSKEGFHETRACDglhSEQKQKERAGTRVGCKAMILIKKFDPGKWMVTKFVKNHN 158
                           6*******************************************99999999************************************* PP

                  FAR1  87 He 88 
                           H 
  Sobic.001G433000.2.p 159 HG 160
                           *5 PP
2FAR191.61e-28208300290
                  FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                           fY +YA+ +GF+ r+s+  +s+r+++i++r+ vCskeg+re ++kk    + k++r+r+ tr+gCka+++vkk+++gkw+v+k+e+eHn
  Sobic.001G433000.2.p 208 FYVNYARLTGFRARISRYCRSRRDNSIISRQIVCSKEGFRELRTKKvmtdEGKTKRPRMITRVGCKAMIVVKKMNSGKWMVSKFEKEHN 296
                           9********************************************99998899999********************************* PP

                  FAR1  87 Hela 90 
                           H+l+
  Sobic.001G433000.2.p 297 HSLS 300
                           **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-2570160IPR004330FAR1 DNA binding domain
PfamPF031011.4E-26208300IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MVVMEGTAIG TAIESKPGNE QKDSLTEVLR TTETLVARDC EVEKLIGLED DTELTPYEGM  60
EFESEDAARD FYSTYARSAG FRIRISRYTR SRRDNSVISR RIVCSKEGFH ETRACDGLHS  120
EQKQKERAGT RVGCKAMILI KKFDPGKWMV TKFVKNHNHG PVPPRRLDSR PADQDCDQIE  180
KPHSIEADPV QEPFEGMEFE SEEAAKFFYV NYARLTGFRA RISRYCRSRR DNSIISRQIV  240
CSKEGFRELR TKKVMTDEGK TKRPRMITRV GCKAMIVVKK MNSGKWMVSK FEKEHNHSLS  300
HSKMIPGTSN ITSREVADFA AKSADPNEVK NEGFGAGTQC NPADSLTVLY NNLCQEAIKF  360
AKEGSVTEEI YHVAVSALKE AAEKVAEVKR SRPTLPHCGF ISESKHDVLQ LKTTSALQCS  420
NQVELTTTSP SPGSRPAQDP ASNLLLIPTK ILTDSGLYDG VDTVVPLSRG FPKNGKSAMG  480
DKVHIHQKVL LCILRPQRPL HKNLRTLVLI NSSMERSKLS MEVPKIPWLL FLQYLLHCAC  540
L*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.4880.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G433000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9546300.0EU954630.1 Zea mays clone 1474335 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310343.10.0uncharacterized protein LOC8078835
TrEMBLA0A1B6QPC80.0A0A1B6QPC8_SORBI; Uncharacterized protein
STRINGSb01g040730.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.16e-30FAR1-related sequence 7