PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.001G433300.1.p

Common Name

Sb01g040760, SORBIDRAFT_01g040760

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

FAR1

Protein Properties

Length: 980aa MW: 111797 Da PI: 6.3059

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.001G433300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.2	3.1e-19	100	205	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtraetrtgCkaklkvkkek 72 Y++YA+++GF+ ++++ ++ +g+ +++tf+C+ gk+ + +ek++r+ ++++tgCka+l ++ ++ Sobic.001G433300.1.p 100 LYKAYAYRTGFHAVRRTCHNY--EGQRYRSTFTCTYGGKSGTGAAPsdvpgtryplrskrgsaaKEKKSRRGTTEKTGCKAMLIIRDKR 186 6*********999998887..7888********999887789**********99999999999**********99 PP FAR1 73 .dgkwevtkleleHnHela 90 dg+w+v+++eleHnH+++ Sobic.001G433300.1.p 187 vDGRWKVESVELEHNHPCT 205 9*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.6E-17	100	205	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.3E-23	332	426	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.953	613	649	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0011	624	651	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 980 aa Download sequence Send to blast
MGAGSKRRAT GAQNPSLESD EEEARRVKEE LADDLNGYPA EEEEEEEDEV VVEDDEVVIP 60 SDDEEDGGGG DIVFVPNTLE EALVPRVGMV FDSVDEAFAL YKAYAYRTGF HAVRRTCHNY 120 EGQRYRSTFT CTYGGKSGTG AAPSDVPGTR YPLRSKRGSA AKEKKSRRGT TEKTGCKAML 180 IIRDKRVDGR WKVESVELEH NHPCTPDMVR FLKAYREMPE SAKKKAKITD EMDEMVEKSL 240 SEIAETRKFP TRPKRGASVG AAVGSQRFSR LESFMQRFGE DDLNSLKKFI EKMQHRKPNF 300 IHSWDLDRES HVKNFFWTDS RAQAQYRYFG DVITLDVMYL QHSRASLPLA TLLGVNNHGH 360 LVLLGCGLLS GDSKENYVWL LKRWLSCMNG KSPEAITTGY SDVISEAVAE VFPNARHRFC 420 FWHILKKLLE NVGRTHEKEA ISSRFKEVVY DSVTLTDFEK EWGAMVDQYN LKDNEWFSAL 480 YSCRKQWAPG YVNHSFWAGT SAIRKAEKTD PYFDSVVSKT TLPVFLEQYE TTLKEKLERE 540 AYDDLRSYYS RLTLLSGLPF EEQLVELYTV TMFQTFQDEI KQLMHVICKE VDRSGNSITY 600 MVSELIQGKK VDYTVVYDNS DKDVWCICRS FPSRGILCSH ALAVLKQENV LMLPSKYILN 660 RWRKDFRILN SSANANCMES DRNLGIYDDL YFRGHEYFED VIDIGAREPE LKEFVLSAMK 720 EAKDRLIRPD HSQQDDQRVD VNMTVTGQVS ADTRVDMNMA SHTSALIQGD RRVDVDIAPN 780 APALVHGDTM TSNATALIHR DRRVEMKMPT SHLIHGEGRL DMNMASPHLM QRERRVDMNM 840 ASPHLIQGDR RVDMNLASPH FIHSDRRVDM NLASPHLIHG DRRVDMNMAS PHLMQGDARV 900 DMNMVSTSQN GMHTFDLVNI NLESGSLPMA ATDFMQMHPH PAVYHPKQLL DMRDQVMDAN 960 KRPNMETNTY FMGGGMHVG*

Sequence ? help Back to Top

Protein Sequence Length: 980 aa Download sequence Send to blast

MGAGSKRRAT GAQNPSLESD EEEARRVKEE LADDLNGYPA EEEEEEEDEV VVEDDEVVIP  60
SDDEEDGGGG DIVFVPNTLE EALVPRVGMV FDSVDEAFAL YKAYAYRTGF HAVRRTCHNY  120
EGQRYRSTFT CTYGGKSGTG AAPSDVPGTR YPLRSKRGSA AKEKKSRRGT TEKTGCKAML  180
IIRDKRVDGR WKVESVELEH NHPCTPDMVR FLKAYREMPE SAKKKAKITD EMDEMVEKSL  240
SEIAETRKFP TRPKRGASVG AAVGSQRFSR LESFMQRFGE DDLNSLKKFI EKMQHRKPNF  300
IHSWDLDRES HVKNFFWTDS RAQAQYRYFG DVITLDVMYL QHSRASLPLA TLLGVNNHGH  360
LVLLGCGLLS GDSKENYVWL LKRWLSCMNG KSPEAITTGY SDVISEAVAE VFPNARHRFC  420
FWHILKKLLE NVGRTHEKEA ISSRFKEVVY DSVTLTDFEK EWGAMVDQYN LKDNEWFSAL  480
YSCRKQWAPG YVNHSFWAGT SAIRKAEKTD PYFDSVVSKT TLPVFLEQYE TTLKEKLERE  540
AYDDLRSYYS RLTLLSGLPF EEQLVELYTV TMFQTFQDEI KQLMHVICKE VDRSGNSITY  600
MVSELIQGKK VDYTVVYDNS DKDVWCICRS FPSRGILCSH ALAVLKQENV LMLPSKYILN  660
RWRKDFRILN SSANANCMES DRNLGIYDDL YFRGHEYFED VIDIGAREPE LKEFVLSAMK  720
EAKDRLIRPD HSQQDDQRVD VNMTVTGQVS ADTRVDMNMA SHTSALIQGD RRVDVDIAPN  780
APALVHGDTM TSNATALIHR DRRVEMKMPT SHLIHGEGRL DMNMASPHLM QRERRVDMNM  840
ASPHLIQGDR RVDMNLASPH FIHSDRRVDM NLASPHLIHG DRRVDMNMAS PHLMQGDARV  900
DMNMVSTSQN GMHTFDLVNI NLESGSLPMA ATDFMQMHPH PAVYHPKQLL DMRDQVMDAN  960
KRPNMETNTY FMGGGMHVG*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.21031	0.0	leaf\| panicle

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.001G433300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT066368	0.0	BT066368.1 Zea mays full-length cDNA clone ZM_BFc0009K07 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002468164.1	0.0	protein FAR1-RELATED SEQUENCE 6
TrEMBL	C5WQU8	0.0	C5WQU8_SORBI; Uncharacterized protein
STRING	Sb01g040760.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967
Representative plant	OGRP15931	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-85	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Sobic.001G433300.1.p
Entrez Gene	8054321