PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G440800.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 729aa    MW: 80665.5 Da    PI: 6.786
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G440800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.5e-092769347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          +WT +E+e + +a +q G++ +++I ++++  +   q++++++ +
  Sobic.001G440800.1.p 27 AWTHQEEENFFNALRQVGKN-FDKITHRVQ-SKNKDQVRHYYYRL 69
                          6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.5E-102173IPR009057Homeodomain-like
PROSITE profilePS5129312.8522374IPR017884SANT domain
SMARTSM007178.0E-72472IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-52672IPR009057Homeodomain-like
CDDcd001671.59E-62770No hitNo description
PfamPF002494.2E-72769IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MSFTGSAPES SDPNKKPAKK QTRQWAAWTH QEEENFFNAL RQVGKNFDKI THRVQSKNKD  60
QVRHYYYRLV RRMKKLLGPR FLLDAKNSKD TIAAMLRWWS LLEKFSCSAS KLHLKPRRFK  120
TFVEAFGKQL LKDSKSRRKR SRVDMCLPSP SPNVSKVPGN ETPVKLLSVD AQNGSRVASP  180
KGTIFKRVAE PISSKSGTTK GDLSATRTVK QKRKAGGTVA SAAYKKWERA AMAGVSLVAD  240
AAEELERNTV NPGMLCNVDA RTLTSSSDRL CTVDGISTNH MKEADSQAPV KLKLQLFPIN  300
EATRKALEKD DHNPHLELTL SSRKKISSVL EHLNRKWGNS NIASGELILF PYCANQEDLA  360
TYQRWTTRDT VVVADVFLSV NSPSVFRLRY GWFSLVELGA GVSEISLIHF EDCMEVIQVK  420
SPSGDKACVQ KDGTLLSNCT HEQYPCSSML LHMTPSSTGK NSEVPDQPAN VPPQFGSQKQ  480
VQVPVTQASE DDQGMNCVAI SEVEWADTLT DISVGHLLTE TSKDAHLDCV GTSVKNPLFL  540
ENPCSYDSFD AAVALHASHY QASEKPAHTP HSTIWGAEET CDEFSFNLSA SRKQEGSNTP  600
SSSPDTDNEV HPSNSEGFQG FLQDLIGGEA GGDNPCNDDA KDIEEFYAKS PPRNDETNEL  660
KDQALADIYW PDSLGPLDLD IPSVRYQADD ILIGDSQNSW SRLMANSLDA FRNLSFFSDK  720
NDSIPSIM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.103100.0embryo| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G440800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0666200.0BT066620.1 Zea mays full-length cDNA clone ZM_BFb0040M22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021307529.10.0TSL-kinase interacting protein 1
TrEMBLA0A1B6QPF30.0A0A1B6QPF3_SORBI; Uncharacterized protein
STRINGGRMZM2G152319_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54783643
Representative plantOGRP21641015
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.31e-171TSL-kinase interacting protein 1