PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.001G446500.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bHLH

Protein Properties

Length: 327aa MW: 36194.7 Da PI: 6.3191

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.001G446500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.7	7.6e-12	150	197	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ + f L +++P + +K +K++ L ++eY+k+L+ Sobic.001G446500.1.p 150 QEHVIAERKRREKMQQQFVALATIVPDL-----TKTDKISLLGSTIEYVKQLE 197 5799*********************9.....9***************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.967	147	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-9	150	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.68E-15	151	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.0E-16	151	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.83E-10	152	201	No hit	No description
SMART	SM00353	8.3E-12	153	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MDELNKWHSH PDYSEEELAY MYRQQQEEEH AGMQQQHHFA EQQQYYTPPA AMAPPRSPSP 60 FLEFLPHHHH HSSSFPGFGV PALPPRLPFG PVKNEPGQPS SSSSNRILSF GGQPPSTLNF 120 SSGGDWLEAG VEAVQQMPPE RRSRTHWNTQ EHVIAERKRR EKMQQQFVAL ATIVPDLTKT 180 DKISLLGSTI EYVKQLEEKV KTLEGRRERR TSDPTILETK CRISTDSDAS CSNDSAFAAG 240 GFSPTVEASI HGDTVLLKIC CLERRGVLVM IISELENQGL SIINTSVLPF TDSCLNITIT 300 AKIGVGFSST VELITNLTAA LRGSST*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	155	160	ERKRRE
2	156	161	RKRREK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.001G446500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021316601.1	0.0	transcription factor bHLH18
Refseq	XP_021316605.1	0.0	transcription factor bHLH18
TrEMBL	A0A1B6QPJ6	0.0	A0A1B6QPJ6_SORBI; Uncharacterized protein
STRING	Sb01g041960.1	1e-119	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6401	31	49
Representative plant	OGRP11974	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	5e-35	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sobic.001G446500.1.p