PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G450700.1.p
Common NameSb01g042370, SORBIDRAFT_01g042370
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HSF
Protein Properties Length: 416aa    MW: 46456.8 Da    PI: 4.6754
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G450700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.62.3e-34511432103
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+y++++d++++ +isws+ g sfv++d++ f++++Lp++Fkh++f+SF+RQLn+YgF+kv+ ++         we++++ F kg+
  Sobic.001G450700.1.p  51 FLTKVYDMVSDPATDAVISWSAAGGSFVIWDSHVFERDLLPRHFKHNHFTSFIRQLNTYGFHKVDPDR---------WEWANEGFVKGQ 130
                           9****************************************************************999.........************ PP

                           XXXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkkse 103
                           k+ll++ikrkk++
  Sobic.001G450700.1.p 131 KHLLKTIKRKKKS 143
                           **********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.9E-5547140IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.03E-3447140IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.6E-3648140IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.8E-185174IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.0E-3151140IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.8E-1889101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.8E-18102114IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MGSKKRSPQH PASPAGGEVG AQTAGKAVPV TAAPESAPVS VVPKPPDVAP FLTKVYDMVS  60
DPATDAVISW SAAGGSFVIW DSHVFERDLL PRHFKHNHFT SFIRQLNTYG FHKVDPDRWE  120
WANEGFVKGQ KHLLKTIKRK KKSSQDVPSD LQSVPVKTAP GTENIEIGKY GGLAKEVETL  180
KRDKALLMQQ LVDLRQYQQS SSLEVQNLIQ RLRVMEQNQQ QMMALLAIVV QNPDFLNQLV  240
QQQRRSNWWN DDGNRKRRFQ ALEHGPVDDQ ETSGGGAQII QYRPPVPETS NQPIPGNEAI  300
YSTPAQPVSS HAQPVSSPAE EMPMDVEMTS NNVDTLDSTG NDFTDTSALC EWDDMDIFGD  360
ELEYILQQPE QNFQVDPPLT VEDYGYDRPR LEQDCQMEAQ QDCKNPQYAD VTTEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-244514314123Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.206910.0embryo
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G450700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0431890.0BT043189.1 Zea mays full-length cDNA clone ZM_BFc0119D19 mRNA, complete cds.
GenBankEU9609090.0EU960909.1 Zea mays clone 229513 heat shock factor protein HSF8 mRNA, complete cds.
GenBankJX4284990.0JX428499.1 Zea mays subsp. mays clone pUT3097 HSF14 HSF type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468244.10.0heat stress transcription factor A-9
RefseqXP_021306702.10.0heat stress transcription factor A-9
SwissprotQ10PR40.0HSFA9_ORYSJ; Heat stress transcription factor A-9
TrEMBLC5WSM10.0C5WSM1_SORBI; Uncharacterized protein
STRINGSb01g042370.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114943039
Representative plantOGRP1278345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.22e-70heat shock factor 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]