PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G453000.3.p
Common NameSb01g042570, SORBIDRAFT_01g042570
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 617aa    MW: 69190.9 Da    PI: 5.0057
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G453000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.26.9e-19221511128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 
                           lp+G++F+P+d++++  +L+++v + +      +  +e+ik vd     y  +P+d+p  v+++ +  yfF+++ +  +++   n a  
  Sobic.001G453000.3.p  22 LPRGVEFNPSDSDIL-WHLAAEVGNGRterhpfI--HEFIKFVDgdggFYCRHPQDIP-GVRQDGRASYFFHRSFEPCNNE---NDA-- 101
                           699***********9.789999988885665432..2234444444559999******.677888999*****99987653...333.. PP

                   NAM  80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                           s  Wk+ g+ ++++  +g+l g+k+++++y    +++++++tdW +h+y+l
  Sobic.001G453000.3.p 102 SNCWKKIGSPRSIIL-GGTLQGCKEVFALYadMTSDKSSQETDWRLHQYHL 151
                           458************.99************6545888889**********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-2514168IPR003441NAC domain
PROSITE profilePS5100522.20722169IPR003441NAC domain
PfamPF023652.1E-823151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MFFAGSAPDP TVLMHCESWP GLPRGVEFNP SDSDILWHLA AEVGNGRTER HPFIHEFIKF  60
VDGDGGFYCR HPQDIPGVRQ DGRASYFFHR SFEPCNNEND ASNCWKKIGS PRSIILGGTL  120
QGCKEVFALY ADMTSDKSSQ ETDWRLHQYH LQNTVKAESE IVVSKIFLAS RNNLCELAEE  180
GRIESEQYVS THKDSSVECA KGFNFEICTE IDELDHIPLK ERYRILLADK SSGLGTVSTG  240
KSIMCVETSR SSPKRNHEGT THKEDICSML QEISSAPPII ESNPMDDNSN MTLLGEDLPV  300
EGSENQIDGT ATCMSENSEL VARKQGAHLA DVKLEPALEG YKIGPSESPQ ANSTHAKGSV  360
PSLGVKDELT DCELPEKVSF SSRQRRKRKT SCSTEKMLEE DADTVKEGVA YRSRRRRKKT  420
ATDSIEKALD EDAPGLLQIL LNRGIGVEEI KLYGAEEDNE MIEDSTESNF EDLENVIANI  480
FPKKGKGYLL SVSRYERGEK AIYCLSCLIS LIEQSRYLQF RDCPVEWGWC RDLQSFIFVF  540
TSHNRIVLER PEYGYATYFF EVVQSTPIEW QIRRLVVAMK LSGCGRTALI ENRPLMVGED  600
LTEGGLRNVL LIGGRR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G453000.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9730650.0EU973065.1 Zea mays clone 392770 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465629.10.0uncharacterized protein LOC8085287
TrEMBLA0A1Z5SAN10.0A0A1Z5SAN1_SORBI; Uncharacterized protein
STRINGSb01g042570.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-33NAC family protein