PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.001G456000.2.p

Common Name

Sb01g042850, SbDL, SORBIDRAFT_01g042850

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

YABBY

Protein Properties

Length: 205aa MW: 22985.5 Da PI: 8.4936

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.001G456000.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	134.6	1.2e-41	1	147	1	162
YABBY 1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnveke 89 +d++s+se++Cyv+C++Cnt+lav vP + l+ +vtv+CGhC +l l+ + ++ s d+ l + + + n+ ++ Sobic.001G456000.2.p 1 MDMVSQSEHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNNLSY--LSPRPPMVQPLSPTDHPLGPF--------QCQGPCNDCRR 79 57899***********************************99865..333332222222222233332........22222333333 PP YABBY 90 esastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162 + ++ s ++e +pr+p v++PPek+ r Psaynrf++eeiqrika+ Pdi hreafs+aaknWa Sobic.001G456000.2.p 80 N-----QPLPLASPTSTELSPRMPFVVKPPEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWAK 147 3.....33333355678889*************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.5E-46	6	148	IPR006780	YABBY protein
SuperFamily	SSF47095	1.57E-8	90	149	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.1E-5	102	149	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010254	Biological Process	nectary development
GO:0010582	Biological Process	floral meristem determinacy
GO:0048479	Biological Process	style development

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MDMVSQSEHL CYVRCTYCNT VLAVGVPCKR LMDTVTVKCG HCNNLSYLSP RPPMVQPLSP 60 TDHPLGPFQC QGPCNDCRRN QPLPLASPTS TELSPRMPFV VKPPEKKHRL PSAYNRFMRE 120 EIQRIKAAKP DIPHREAFSM AAKNWAKCDP RCSTTASTAT SNSAPEPRVV PTPQVTEARF 180 DLEDRAKEQV IESFDIFKQI ERSI*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.20934	0.0	ovary

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Detected during flower and leaf development. Expression in the flower meristem in the early stage of flower development. When carpel primordia begin to form, specific and uniform expression in carpel primordia. Expression in the central region of the leaf plastochron 1 (P1) primordia. Detected up to P4 stage, hardly detected in the P5 leaves. {ECO:0000269\|PubMed:14729915}.

Functional Description ? help Back to Top
Source	Description
UniProt	Regulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269\|PubMed:14729915}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00220	DAP	Transfer from AT1G69180	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.001G456000.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB470268	0.0	AB470268.1 Sorghum bicolor SbDL mRNA for DL related protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002468276.1	1e-151	protein DROOPING LEAF isoform X2
Swissprot	Q76EJ0	1e-115	YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBL	C5NS03	1e-149	C5NS03_SORBI; DL related protein
STRING	Sb01g042850.1	1e-150	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69180.1	7e-52	YABBY family protein

Link Out ? help Back to Top
Phytozome	Sobic.001G456000.2.p
Entrez Gene	8056888

Publications ? help Back to Top
Ishikawa M, et al. The spatial expression patterns of DROOPING LEAF orthologs suggest a conserved function in grasses. Genes Genet. Syst., 2009. 84(2): p. 137-46 [PMID:19556707]