PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G459400.3.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 287aa    MW: 32704.3 Da    PI: 7.5308
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G459400.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.51.9e-1631125198
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                           ffk+l+p ++     l+lp kf e  g    ++ +l+l+  e    W+v++ ++ k g ++l kGWk+F++a++L+ g ++vF++d++ 
  Sobic.001G459400.3.p  31 FFKILIPGMYE--EALRLPTKFGEILGAR--RDLKLRLTGgEMMPLWDVEVFVDEKNGDMYLHKGWKKFARAHDLRKGYMLVFRYDDDG 115
                           78888554444..459*******555644..666888888555599*****99999999***************************99* PP

                           EE..EEEEE- CS
                    B3  89 efelvvkvfr 98 
                           ++ lvv+vf+
  Sobic.001G459400.3.p 116 RGDLVVTVFD 125
                           ********98 PP
2B342.21.4e-131732491087
                           HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                    B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgr 87 
                           + +++ l +p +f ++hg++ ++ ++l+     grsW v+l+   +++       ++ GW +F+ +ngLk+gD++ F+++++
  Sobic.001G459400.3.p 173 AKQNQYLNVPVEFQDAHGYVRRRRVELQ---MGGRSWMVNLKR--SKRLlgdrSSFKYGWHQFCVDNGLKVGDVCFFRVIRE 249
                           56678899************88875555...478*******44..433233458899*********************8875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.19E-1729125No hitNo description
PROSITE profilePS5086312.47829127IPR003340B3 DNA binding domain
SuperFamilySSF1019365.49E-1730133IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-1531128IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-1331125IPR003340B3 DNA binding domain
SMARTSM010191.4E-931127IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-23158250IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-16159250IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.378164281IPR003340B3 DNA binding domain
SMARTSM010190.0021166256IPR003340B3 DNA binding domain
PfamPF023621.8E-10175249IPR003340B3 DNA binding domain
CDDcd100174.93E-11179252No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MPKLKPARCL YLHRAGTGTK EEMAGLSDFE FFKILIPGMY EEALRLPTKF GEILGARRDL  60
KLRLTGGEMM PLWDVEVFVD EKNGDMYLHK GWKKFARAHD LRKGYMLVFR YDDDGRGDLV  120
VTVFDLTTCR KEYLHAGAGG GGNTNPGAGG GRSLPIAEPS HFAVTLRQCN LEAKQNQYLN  180
VPVEFQDAHG YVRRRRVELQ MGGRSWMVNL KRSKRLLGDR SSFKYGWHQF CVDNGLKVGD  240
VCFFRVIREG SRCGDDDEDE EWEPEEEDDE HVLKVEVRKK NGTFVS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G459400.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311974.10.0B3 domain-containing protein Os03g0212300
SwissprotQ10Q268e-78Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBLA0A1Z5SAS40.0A0A1Z5SAS4_SORBI; Uncharacterized protein
STRINGSb01g043110.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Representative plantOGRP1414234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.12e-14B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]