PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G468400.1.p
Common NameSb01g043910, SORBIDRAFT_01g043910
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HD-ZIP
Protein Properties Length: 243aa    MW: 26596.8 Da    PI: 6.3797
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G468400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13.1e-1858111356
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           k++++++eq + Le  F+k+r++ + ++ +LA++lgL+ +qV vWFqNrRa++k
  Sobic.001G468400.1.p  58 KKRRLSDEQARFLELSFRKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHK 111
                           56689***********************************************99 PP
2HD-ZIP_I/II109.62.2e-3558149293
           HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                           kkrrls+eq+++LE sF++e+kLe+ rKv+la eLgl+++qvavWFqnrRAR+k+k +E+++++L++a+da++ +n++Le+e  +++++
  Sobic.001G468400.1.p  58 KKRRLSDEQARFLELSFRKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEEEFSKLRAAHDAVVLQNCHLETELLKMKDR 146
                           9**************************************************************************************99 PP

           HD-ZIP_I/II  91 lke 93 
                           l+e
  Sobic.001G468400.1.p 147 LEE 149
                           986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-1653118IPR009057Homeodomain-like
PROSITE profilePS5007116.63353113IPR001356Homeobox domain
SMARTSM003893.0E-1556117IPR001356Homeobox domain
SuperFamilySSF466892.69E-1657120IPR009057Homeodomain-like
CDDcd000863.00E-1558113No hitNo description
PfamPF000461.3E-1558111IPR001356Homeobox domain
PRINTSPR000315.4E-68493IPR000047Helix-turn-helix motif
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PRINTSPR000315.4E-693109IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGCEEEERLL FPSFVFPESF AEAATPGSGG EQKKARQRRR RKPRPAADGG EGGDEQAKKR  60
RLSDEQARFL ELSFRKERKL ETPRKVQLAA ELGLDAKQVA VWFQNRRARH KSKLMEEEFS  120
KLRAAHDAVV LQNCHLETEL LKMKDRLEEA EEEKRKVIAA AAAAGGGGGG AGAGSSSPSS  180
SSFSTVTHNP AALVGQFGVD PEEAAADLTY MSEYAYNSYM NMMDMDLAPG GYFGGVVYDH  240
FN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13743RRRRKPR
23960RRKPRPAADGGEGGDEQAKKRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G468400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0431630.0BT043163.2 Zea mays full-length cDNA clone ZM_BFc0114N11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465695.11e-178homeobox-leucine zipper protein HOX12
SwissprotQ10QF22e-91HOX12_ORYSJ; Homeobox-leucine zipper protein HOX12
TrEMBLC5WTV61e-176C5WTV6_SORBI; Uncharacterized protein
STRINGSb01g043910.11e-177(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101
Representative plantOGRP37761025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66700.13e-34homeobox 53
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Gao S,Fang J,Xu F,Wang W,Chu C
    Rice HOX12 Regulates Panicle Exsertion by Directly Modulating the Expression of ELONGATED UPPERMOST INTERNODE1.
    Plant Cell, 2016. 28(3): p. 680-95
    [PMID:26977084]