PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.001G479600.1.p

Common Name

Sb01g044910, SORBIDRAFT_01g044910

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

Protein Properties

Length: 240aa MW: 26825 Da PI: 9.6973

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.001G479600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	43.8	4.7e-14	139	228	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k++++s+v + +l lp +f+ +++ k ++ +tl de+g+++ ++ ++++ l++GW +F+ +g+ +gD vF+l++ ++ Sobic.001G479600.1.p 139 FVKAMLHSHVVRGFWLQLPCHFCHTYMPK--QDSIITLVDEKGEEFATNY--LAYKKG--LSGGWAGFALCHGMHDGDAAVFQLIKPTT 221 89*******************999744..5669***********..555555..9*********************98666 PP E..EEEEE- CS B3 90 felvvkvfr 98 f +v ++r Sobic.001G479600.1.p 222 F--KVYIVR 228 6..888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.6E-17	130	229	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.96E-21	132	229	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.17E-21	137	228	No hit	No description
PROSITE profile	PS50863	11.307	139	230	IPR003340	B3 DNA binding domain
SMART	SM01019	1.7E-12	139	230	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.8E-12	139	229	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MVTAAAETMG MSPYEAARER NVQENKRKME ALNLRHLSAV IKEAPKTPSP LKPKRRRIIE 60 NAVVVPSPPR RSRRLAQLPE VKYAEIAPHT AERMTRSPRK PADLIYLARS GTVSMKARLE 120 ATRKAEELES QLDPDIPSFV KAMLHSHVVR GFWLQLPCHF CHTYMPKQDS IITLVDEKGE 180 EFATNYLAYK KGLSGGWAGF ALCHGMHDGD AAVFQLIKPT TFKVYIVRAA SDDGSEVDE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	53	57	KRRRI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.001G479600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT087300	0.0	BT087300.1 Zea mays full-length cDNA clone ZM_BFb0032O11 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002465742.1	1e-179	B3 domain-containing protein Os03g0184500
Swissprot	Q10QS9	1e-131	Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBL	C5WUX4	1e-178	C5WUX4_SORBI; Uncharacterized protein
STRING	Sb01g044910.1	1e-179	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103
Representative plant	OGRP995	16	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	4e-51	B3 family protein

Link Out ? help Back to Top
Phytozome	Sobic.001G479600.1.p
Entrez Gene	8057656

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]