PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G481300.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 290aa    MW: 30518.6 Da    PI: 4.5875
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G481300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11e-1883133155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GVr+++ +g+W+Ae+rdp+    r  r++lg+f tae Aa+a+++a++ l+g
  Sobic.001G481300.1.p  83 SQYHGVRRRP-WGKWAAEVRDPV----RgVRVWLGTFATAEAAARAYDHAARDLRG 133
                           78********.**********63....56************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.37E-2183142IPR016177DNA-binding domain
SMARTSM003804.1E-3184147IPR001471AP2/ERF domain
PfamPF008473.9E-1284133IPR001471AP2/ERF domain
PROSITE profilePS5103223.76284141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-3184142IPR001471AP2/ERF domain
CDDcd000187.22E-1584141No hitNo description
PRINTSPR003672.6E-108596IPR001471AP2/ERF domain
PRINTSPR003672.6E-10107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MCGGAILAEL IPSAPARRVV TPGHASGGGG GDDDFEAAFR DFDEDSDEGA VMKEERQKRK  60
AFGFAVPATA PGTRRRRRPP SSSQYHGVRR RPWGKWAAEV RDPVRGVRVW LGTFATAEAA  120
ARAYDHAARD LRGANAKLNF PSKRRSAAAN AGPRVVDLVD EDDGALGARA LSVENETEGS  180
GGGGGAVPDF SWQGLSATDD SAVVELGGAK KRARTEPEPQ EVAQAPPSDD SADMLFDAFM  240
FGDQFSLFNG GGVYDEPAAT AMDGLLGGDA VLCNDSVGLW SFDDSVCYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-18841431474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15777KRKAFGFAVPATAPGTRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G481300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0876882e-84BT087688.1 Zea mays full-length cDNA clone ZM_BFb0158A18 mRNA, complete cds.
GenBankJX4699182e-84JX469918.1 Zea mays subsp. mays clone UT3174 AP2-EREBP-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317882.10.0ethylene-responsive transcription factor 1
TrEMBLA0A1B6QQ510.0A0A1B6QQ51_SORBI; Uncharacterized protein
STRINGSb01g045050.11e-149(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43712654
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.26e-21ERF family protein