PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.001G490350.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

MYB_related

Protein Properties

Length: 134aa MW: 14409.6 Da PI: 8.1237

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.001G490350.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.1	1.5e-11	62	107	1	47
TSSS-HHHHHHH.HHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdell.vdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg ++ +Ed l+ v++ ++lG++ W++Ia++++ Rt++ +k++w+++ Sobic.001G490350.1.p 62 RGGFSDQEDRLIvVHLQALLGNR-WAAIASYLP-DRTDNGVKNYWNTH 107 56677777776615777888888.*******.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-4	5	23	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.12E-10	57	109	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.757	57	112	IPR017930	Myb domain
SMART	SM00717	3.3E-8	61	110	IPR001005	SANT/Myb domain
Pfam	PF00249	3.0E-10	62	107	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.3E-16	64	108	IPR009057	Homeodomain-like
CDD	cd00167	1.38E-9	65	108	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
MGRPPCCDKE GVKKGPWTPE EDLVGVHLPF PSYLPRPLIC ACMQGCCGAA RAAASGGPGI 60 RRGGFSDQED RLIVVHLQAL LGNRWAAIAS YLPDRTDNGV KNYWNTHVAS LPPKGQRELK 120 LPTDIDLLVS TTM*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in germinating seeds, rosette and cauline leaves, flower buds, open flowers, stems and developing siliques. {ECO:0000269\|PubMed:25305760}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the activation of cuticular wax biosynthesis under drought stress. Binds directly to the promoters of genes involved in cuticular wax biosynthesis. Transactivates WSD1, KCS2/DAISY, CER1, CER2, FAR3 and ECR genes (PubMed:25305760, PubMed:27577115). Functions together with MYB96 in the activation of cuticular wax biosynthesis (PubMed:27577115). {ECO:0000269\|PubMed:25305760, ECO:0000269\|PubMed:27577115}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.001G490350.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt stress, osmotic shock and abscisic acid (ABA). {ECO:0000269\|PubMed:25305760}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU962848	2e-57	EU962848.1 Zea mays clone 246006 myb transcription factor MYB30 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001149309.1	3e-44	uncharacterized protein LOC100282932
Swissprot	Q9SN78	1e-34	MYB94_ARATH; Transcription factor MYB94
TrEMBL	A0A1Z5SBM4	7e-94	A0A1Z5SBM4_SORBI; Uncharacterized protein
STRING	GRMZM2G098179_P01	1e-43	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62470.1	1e-29	myb domain protein 96

Link Out ? help Back to Top
Phytozome	Sobic.001G490350.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Cui F, et al. Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation. Mol Plant, 2016. 9(6): p. 926-38 [PMID:27060495] Lee SB,Kim HU,Suh MC MYB94 and MYB96 Additively Activate Cuticular Wax Biosynthesis in Arabidopsis. Plant Cell Physiol., 2016. 57(11): p. 2300-2311 [PMID:27577115]