PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G494000.1.p
Common NameSb01g046170, SORBIDRAFT_01g046170
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family TALE
Protein Properties Length: 591aa    MW: 62831.4 Da    PI: 6.3019
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G494000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.21.3e-083543911954
                           HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           Fe   ++yp+ +e+  LA+++gL+  qV++WF N R +
  Sobic.001G494000.1.p 354 FEHflHPYPKDSEKLMLARQTGLSRGQVSNWFINARVR 391
                           554459******************************88 PP
2BELL108.63.7e-35216287172
                  BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                           erq+lq+k + L+ ll++Vd++Y++y++q+q+v+ssF+avag g+a+pYt+lAl++iSrhFr+L+da+  q+
  Sobic.001G494000.1.p 216 ERQDLQNKVSALMALLDQVDRKYRHYHHQMQIVMSSFDAVAGAGAARPYTALALQTISRHFRSLRDAVGAQV 287
                           799*****************************************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.8E-48143285IPR006563POX domain
PfamPF075262.2E-47149283IPR006563POX domain
PROSITE profilePS5007112.001332395IPR001356Homeobox domain
SMARTSM003891.7E-9335399IPR001356Homeobox domain
CDDcd000863.28E-12335396No hitNo description
SuperFamilySSF466894.71E-17336402IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-27338401IPR009057Homeodomain-like
PfamPF059204.6E-17352391IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MATFFSTSTN QRDLTGGGGD MSFHHYTYSD SPAGGLMPFP ATIVSEGHVA HGGDDGRDEP  60
AAFVNVNVNA RDGTTSGAEM GLQTQLLMAN ASAAVQHQGL SLSLGTQGVP VSLYQYRQAQ  120
QAGMAAAASL LSPNQASAAA SRNAQSIYIQ NSKYLKAARE LLDEVVNVRD AIKRKGADKN  180
QQGKDSGGEG KDAETSDDKA DEHEGNSSAA ELTPSERQDL QNKVSALMAL LDQVDRKYRH  240
YHHQMQIVMS SFDAVAGAGA ARPYTALALQ TISRHFRSLR DAVGAQVQSL RRSLGEKDTS  300
AHGGGLSRLR YIDQQLRQQR AMQQFGMMQQ PQHAWRPQRG LPESAVSVLR AWLFEHFLHP  360
YPKDSEKLML ARQTGLSRGQ VSNWFINARV RLWKPMIEEM YKEEFGAEMD SHSSSENAAG  420
NKGKADEAIS SEDHDEFQSP SSAAAKHGAA AGHHLSAFKS EAIGGMDAAG VGVGVGLSSL  480
DGAIGPYATS LNLGAAVVGN GLQEAFAHHH GGGDARFVQA YGDMAGLGGY DGGSVSLTLG  540
LQHCNDAGAV PAEQQGGLLY GNAGDFEFIN GSAEDRQRFG SSQLLHDFVA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5bng_A1e-17341399159Homeobox protein Meis2
5bng_B1e-17341399159Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.28420.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G494000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284970.0KJ728497.1 Zea mays clone pUT6802 HB transcription factor (HB64) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465808.10.0BEL1-like homeodomain protein 7
RefseqXP_021307660.10.0BEL1-like homeodomain protein 7
SwissprotQ9SIW11e-119BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBLC5WWV80.0C5WWV8_SORBI; Uncharacterized protein
STRINGSb01g046170.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-105BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]