PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G501000.1.p
Common NameSb01g046810, SORBIDRAFT_01g046810
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family E2F/DP
Protein Properties Length: 393aa    MW: 42214.8 Da    PI: 6.6562
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G501000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.44.5e-27135221371
               E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirw 69 
                           +++Lr++++k   ++ek+e+ g++t+neva+eLv+e                     d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w
  Sobic.001G501000.1.p 135 NRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEftdpnnnieapdpdnpnaqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQW 219
                           689*******...*****999************************************************************.******* PP

               E2F_TDP  70 kg 71 
                           kg
  Sobic.001G501000.1.p 220 KG 221
                           98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094043.1E-12842392IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.105.4E-45129227IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.8E-38133221IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.03E-20136222IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023195.3E-25136221IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144581.25E-43226329IPR014889Transcription factor DP, C-terminal
SMARTSM011386.0E-82228390IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.48E-41228335No hitNo description
PfamPF087813.0E-42229362IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MVSGTAHNPD GGGGAQGTQR QPPPPPHTQV GARTPLATPP PVSGGAAHSA STSGGSAGSP  60
PSSRSEQHAP DGAGKGPALG AAPAAAAAAS TPASDSTFLR LNNLDINGDD APSSQAPTSK  120
KKRRGTRAVG PDKGNRGLRQ FSMKVCEKVE SKGRTTYNEV ADELVAEFTD PNNNIEAPDP  180
DNPNAQQYDE KNIRRRVYDA LNVLMAMDII SKDKKEIQWK GLPRTSISDI EELKKEVVGL  240
KGRIEKKSAY LQELQDQYVG LQNLIQRNEQ LYGSGNTPSG GVDLPFILVQ TRPHATVEVE  300
ISEDMQLVHF DFNSTPFELH DDSYVLKEMR FCGKEQHEGA QESTSNGGES SSMSNIYWQQ  360
VHHLERPNNG TVRLPSSPPI PGILKGRVKH EH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B4e-35127226193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119123KKKRR
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G501000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0659570.0BT065957.1 Zea mays full-length cDNA clone ZM_BFb0087C01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468492.10.0transcription factor-like protein DPB
SwissprotQ9FNY21e-136DPB_ARATH; Transcription factor-like protein DPB
TrEMBLC5WXV10.0C5WXV1_SORBI; Uncharacterized protein
STRINGSb01g046810.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Representative plantOGRP25111734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-135Transcription factor DP