PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G506066.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GATA
Protein Properties Length: 243aa    MW: 24927.1 Da    PI: 9.1311
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G506066.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA572.6e-18138171134
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                           C++C + +Tp+WR+gp g++tLCnaCG+++++ +
  Sobic.001G506066.1.p 138 CTHCASEETPQWRQGPAGPSTLCNACGVRFKSGR 171
                           *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.018132168IPR000679Zinc finger, GATA-type
SMARTSM004013.5E-15132182IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-13135196No hitNo description
Gene3DG3DSA:3.30.50.104.0E-14136169IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.63E-15137186No hitNo description
PROSITE patternPS003440138163IPR000679Zinc finger, GATA-type
PfamPF003204.6E-16138171IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MAGCGAAADG NPAAAADELA SGADASLNAF FDHAGLDLAA AGGGQGADEE EELEWLSNMD  60
AFPSVETMSA AVEAAPSAPA AGVGRLEPLP HAHAVGPRTK GLRRRRRVTA PWSVPPVLPP  120
APPLPAPPAG GAAPRRRCTH CASEETPQWR QGPAGPSTLC NACGVRFKSG RLFPEYRPIL  180
SPTFSPLLHS NSHRRVMEMR RHVEVETATA TATAGGRAGA RARRAERAAA RAAAAATTTK  240
GK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G506066.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0184181e-120BT018418.1 Zea mays clone EL01N0356F04.d mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317517.11e-170GATA transcription factor 7-like
TrEMBLA0A1Z5SBE71e-168A0A1Z5SBE7_SORBI; Uncharacterized protein
STRINGGRMZM2G532534_P013e-90(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.14e-26GATA transcription factor 1