PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G511400.1.p
Common NameSb01g047720, SORBIDRAFT_01g047720
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family BES1
Protein Properties Length: 413aa    MW: 41814.5 Da    PI: 5.9895
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G511400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF8221623.9e-50371364101
                DUF822   4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasasp 90 
                            r ptw+ErEnn+rRERrRRaia+ki++GLRa+Gny+l+ ++DnneVlkALc+eAGw+ve+DGttyrkg+kp+  + + +ag     sp
  Sobic.001G511400.1.p  37 ARVPTWRERENNRRRERRRRAIASKIFTGLRAHGNYALRRHCDNNEVLKALCEEAGWTVEPDGTTYRKGFKPPgsSDPYMAGFIPGCSP 125
                           799**********************************************************************7666667777777888 PP

                DUF822  91 esslqsslkss 101
                            s+  s ++s 
  Sobic.001G511400.1.p 126 VSPGMSCPVSP 136
                           77766555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056877.9E-4937157IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MNGGEGGAGG SGDGADGAAA GGGGGEGAPG VGAGTLARVP TWRERENNRR RERRRRAIAS  60
KIFTGLRAHG NYALRRHCDN NEVLKALCEE AGWTVEPDGT TYRKGFKPPG SSDPYMAGFI  120
PGCSPVSPGM SCPVSPGMVS CPVSPRGYNG LSSPSSPTHF GGRGSSFFYG GASSSRGTGI  180
GGGLLPWLNN MSHSDDASYA DGYSFSAPVT PQNGSPPRRK MARWAPDNAA AAGGSSSNVQ  240
SPWAASPGPS RYASQPHTPV RGEAVAADPV SLLTGLQISA AAANKSPAYS MFDFDAGSYS  300
SRPAGQSSGG AWAAAAPGAG DGDAQVAPHG FSFGWSGGAF NAWEGEKATG AFNAWEGEKA  360
TGAINAWEGE KASGAFSAWE GEKVSEAEEY MDEGDLELTL GNSKAGAGAD RG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A4e-2038108372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B4e-2038108372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C4e-2038108372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D4e-2038108372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G511400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0626680.0BT062668.1 Zea mays full-length cDNA clone ZM_BFb0330H18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468545.10.0protein BZR1 homolog 4
TrEMBLC5WYY10.0C5WYY1_SORBI; Uncharacterized protein
STRINGSb01g047720.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5789722
Representative plantOGRP1954222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36780.15e-26BES1/BZR1 homolog 2