PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G512700.3.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 737aa    MW: 81663.4 Da    PI: 6.5602
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G512700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.6e-093173347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          +WT +E+e + +a +q G++ +++I ++++  +   q++++++ +
  Sobic.001G512700.3.p 31 AWTHQEEENFFNALRQVGKN-FDKITHRVQ-SKNKDQVRHYYYRL 73
                          6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.06E-102577IPR009057Homeodomain-like
PROSITE profilePS5129312.8522778IPR017884SANT domain
SMARTSM007178.0E-72876IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-53076IPR009057Homeodomain-like
CDDcd001671.61E-63174No hitNo description
PfamPF002494.3E-73173IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MCTPMSFTVS APEPSDPNTK PAKKQTRQWA AWTHQEEENF FNALRQVGKN FDKITHRVQS  60
KNKDQVRHYY YRLVRRMKKL LGPRFSLDAK NSKDTIAAML RWWSLLEKFS CSASKLHLKP  120
RRFKTFIEAL GKQLLKDRNK SRRKRSRVDM CLPSPSPIIS KAPGNETPPV KFLPVDAQNG  180
SRVASSKGTI FKRVAEPISN KSGTTKGDLS ATRTVKQKRK AGGAVASAAY KKWERAAMAG  240
VSLVADAAEE LERNTINPGI LCNVDARTLT SSSDRLPTAD GISTNHMKEA DSQTPVKLKL  300
QLFPINEATR KALEKDDHNP HLELTLSSRK KISSVLEHLN RKWGNSNIAS GELILFPYCA  360
NQEDLATYQR WTTRDAVAVA DVFLSVNSPS VFRLRYGWFS LVELGAGVSE ISLTHFEDCM  420
IPEVIQVKSP SGDKACVQKD GTLLSNCTHE QYPCSSVLLH MTPSSTGKNS ELPDQPTNVP  480
RSQFGSQKQV QVPVTQAFED DQGTNCVAIS EVEWADTLTD ISVGHLLTEA SKGAHLDCIG  540
TSVKNPLFLE NTCSYDSFDA AVALHASRYQ ASEQPAHAPH STIWGAEETC DEFSFNLSAS  600
RKQEGSNTPS SSPDTDNEVH PSSSEGFQGF FQDLTGEDDA DNPYNDDAKD EEELCAKSPP  660
QNDETNELKD QSLADIYWPD SLGPLDLDIP SVRYQADDIL IGDSQNSWNR LMANSLDAFR  720
NLSFFSDKND SIPSIM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.103100.0embryo| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G512700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0666200.0BT066620.1 Zea mays full-length cDNA clone ZM_BFb0040M22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021301935.10.0TSL-kinase interacting protein 1-like isoform X3
TrEMBLA0A1B6QQN40.0A0A1B6QQN4_SORBI; Uncharacterized protein
STRINGGRMZM2G152319_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54783643
Representative plantOGRP21641015
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.31e-168TSL-kinase interacting protein 1