PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G519100.1.p
Common NameSb01g048420, SORBIDRAFT_01g048420
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family G2-like
Protein Properties Length: 407aa    MW: 43497.3 Da    PI: 8.2996
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G519100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.98.1e-322780255
               G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                          prlrWtp+LH++Fv+a+++LGG++kAtPk++l+lm+v gLt++hvkSHLQ+YR 
  Sobic.001G519100.1.p 27 PRLRWTPDLHHCFVHAIHKLGGQDKATPKRVLQLMGVGGLTISHVKSHLQMYRN 80
                          8****************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-312383IPR009057Homeodomain-like
PROSITE profilePS5129412.6532383IPR017930Myb domain
SuperFamilySSF466897.35E-162582IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-242780IPR006447Myb domain, plants
PfamPF002498.1E-102879IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MTMVRTTTVV GRERSGGVRQ YNRSKVPRLR WTPDLHHCFV HAIHKLGGQD KATPKRVLQL  60
MGVGGLTISH VKSHLQMYRN MRNDLGMQGT MQVHRMQDQE HVYGGGMHME LCTNILVQQQ  120
PQQQCDHECD APCCICCHSP KPGKEATLFQ RQLKRAETRR EREEIDGSAS PKRVVLLRGG  180
PGPGICESDG SPCCALAAAG GYNYMRMMQA AMGVAAAAGA PPPPPPPRHA ETMVEPGGRG  240
PGIKQTQLQL ARPGADGDGG DEHAPPPPPP PSNSKQRFTF LGFVVAPGPP PPPPPPPPCC  300
SSRDRDHPFE MVGTALTHHR SSAEAARRLP RGLETPPSKA AVAQQVGDPC SSSAGSEEDD  360
DGCSLSLSLA LDTRSSRDGD EGGRLSPTAT ASSRSRISLD LSLSTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-182882357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-182882357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-182882357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-182882357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G519100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0689101e-126BT068910.1 Zea mays full-length cDNA clone ZM_BFc0191L18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465930.20.0formin-like protein 8
TrEMBLA0A1B6QQR00.0A0A1B6QQR0_SORBI; Uncharacterized protein
STRINGSb01g048420.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76102950
Representative plantOGRP28515123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.17e-26G2-like family protein