PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G526200.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family TALE
Protein Properties Length: 324aa    MW: 35154.6 Da    PI: 6.0489
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G526200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.31.1e-072733062154
                           HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           k +yp+++++++L +++gL+ +q+ +WF N+R +
  Sobic.001G526200.1.p 273 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 306
                           469*****************************87 PP
2ELK25.33.4e-09227248122
                   ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                           ELK +L++++++++ ++++E++
  Sobic.001G526200.1.p 227 ELKIELKQGFKSRIEDVREEIL 248
                           9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.0E-1661105IPR005540KNOX1
PfamPF037901.7E-1463103IPR005540KNOX1
SMARTSM012561.7E-23116171IPR005541KNOX2
PfamPF037914.4E-18119170IPR005541KNOX2
PROSITE profilePS512139.132227247IPR005539ELK domain
PROSITE profilePS5007111.726247310IPR001356Homeobox domain
SMARTSM003891.9E-10249314IPR001356Homeobox domain
SuperFamilySSF466895.13E-16249313IPR009057Homeodomain-like
CDDcd000861.41E-12250311No hitNo description
Gene3DG3DSA:1.10.10.602.5E-25254313IPR009057Homeodomain-like
PfamPF059201.1E-17267306IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MQGGGGGGDQ AGGSLGMDMG VGYAAGSGGA ECSSSTSAAA AAAAAAAAAA AAAAAEAEER  60
QLLKGEIAVH PLCEQLVAAH VGCLRVATPI DHLPLIDAQL AQSSGLLHSY AAHHRPFLSP  120
HDKHDLDSFL AQYLMLLCSF REQLQQHVRV HAVEAVMACR EIEQSLQDLT GATLEEGTGA  180
TMSEDEDEPP MLEGALDMGS DGHDMMGFGP LLPTDSERSL MERVRQELKI ELKQGFKSRI  240
EDVREEILRK RRAGKLPGDT TSILKQWWQQ HSKWPYPTED DKAKLVEETG LQLKQINNWF  300
INQRKRNWHN NSQTSTLKSK RKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1303322RKRNWHNNSQTSTLKSKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.582e-35root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo at 3 days after pollination (DAP). {ECO:0000269|PubMed:10095070}.
UniprotTISSUE SPECIFICITY: Isoform 1 is expressed in roots and flowers, and at lower levels in leaf blades and leaf sheaths. Isoform 2 is expressed in roots and flowers. {ECO:0000269|PubMed:12034492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G526200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9698410.0EU969841.1 Zea mays clone 336323 homeobox protein HD1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468611.20.0homeobox protein knotted-1-like 3
SwissprotQ94LW30.0KNOS3_ORYSJ; Homeobox protein knotted-1-like 3
TrEMBLA0A1B6QQV90.0A0A1B6QQV9_SORBI; Uncharacterized protein
STRINGGRMZM2G159431_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-139KNOTTED-like homeobox of Arabidopsis thaliana 7