PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.001G528200.1.p

Common Name

Sb01g049150, SORBIDRAFT_01g049150

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

Protein Properties

Length: 331aa MW: 35884.2 Da PI: 9.8413

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.001G528200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	100.4	1.1e-31	39	143	1	99
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+kv tpsdv+k++rlv+pk++ae++ +e++ l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F + Sobic.001G528200.1.p 39 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldAAANEKGLLLSFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRG 127 89*************************955556888*********************************************66 PP .SS.SEE..EEEEE-S CS B3 86 .gr.sefelvvkvfrk 99 g+ +++l++ ++r+ Sobic.001G528200.1.p 128 vGDaARGRLFIDWRRR 143 69999******998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	8.1E-41	31	148	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.93E-29	36	143	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.12E-26	37	124	No hit	No description
SMART	SM01019	4.3E-21	39	144	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.367	39	144	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.3E-28	39	143	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009908	Biological Process	flower development
GO:0048366	Biological Process	leaf development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MEFTAPPTAA RSGGGEERAA EHQQQQQQQL AAVEKEHMFD KVVTPSDVGK LNRLVIPKQH 60 AEKYFPLDAA ANEKGLLLSF EDRTGKPWRF RYSYWNSSQS YVMTKGWSRF VKEKRLDAGD 120 TVSFGRGVGD AARGRLFIDW RRRPDPPVHH QYHHRLPLPS VVPYAPWPHA HHHHYPAAAA 180 AVGVGVGAGA GAARTTTVLH LPPSPSSLYD PHLRHVGYDA YGAGTRQLLF YRPLHHQQPS 240 TAVVLDSVPV RLPTTPGQHA EPPAPVVASS ASKRVRLFGV NLDCAGSEEE NGGGGGWRTS 300 APPTPHGLPS PPSSSSSSSG KARCSLNLDL *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	1e-64	34	144	3	114	B3 domain-containing transcription factor NGA1
5os9_B	1e-64	34	144	3	114	B3 domain-containing transcription factor NGA1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.001G528200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727001	0.0	KJ727001.1 Zea mays clone pUT3977 ABI3VP1 transcription factor (ABI8) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002468620.1	0.0	B3 domain-containing protein Os03g0120900
Swissprot	Q8LMR9	1e-122	Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBL	C5X0X2	0.0	C5X0X2_SORBI; Uncharacterized protein
STRING	Sb01g049150.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP583	37	168
Representative plant	OGRP365	16	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46870.1	3e-65	B3 family protein

Link Out ? help Back to Top
Phytozome	Sobic.001G528200.1.p
Entrez Gene	8085727

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]