PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G529200.1.p
Common NameSb01g049240, SORBIDRAFT_01g049240
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 683aa    MW: 75847.6 Da    PI: 6.0533
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G529200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM183.16.9e-5761331128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                           lppGfrFhPtdeel+ +yLk+k++g+++el e+i+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nratksgyWkatg
  Sobic.001G529200.1.p   6 LPPGFRFHPTDEELIIYYLKRKINGRQIEL-EIIPEVDLYKCEPWDLPeKsFLPSKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATG 93 
                           79****************************.99**************95334455777******************************* PP

                   NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           kd++v s ++++vg+kktLv+y+grap+g++tdWvmheyrl
  Sobic.001G529200.1.p  94 KDRKVNS-HRRAVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 133
                           *******.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-644156IPR003441NAC domain
PROSITE profilePS5100561.6016156IPR003441NAC domain
PfamPF023659.8E-307133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPTDEELI IYYLKRKING RQIELEIIPE VDLYKCEPWD LPEKSFLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKSGYWK ATGKDRKVNS HRRAVGMKKT LVYYRGRAPH  120
GSRTDWVMHE YRLDERECET DTGLQDAYAL CRVFKKTAPG PKIIEHYGAV HHPIEQPQWM  180
ASSVDRSPTL DLSSDVRGDD FESSSFSFPT EAPMDSMHGG FGMQMSAPHE DGKWMQFLSE  240
DAFNATNPFF MNPASSSFSC LPSKVDVALE CARLQHRLSL PPLEVEDFPQ DVSLDTKTSV  300
LRSNPNEVDI LQEFLSVASA SQELINGTSS SYAAEMWPGA GPSSTSTHYI NELSSLVELG  360
VKAKEEADNF YHMDCIGTSV GFASKPVHVD EPVRLVEIAD MEEFKEEKRQ VENLRGVRLH  420
NNDLGEIVVE GDESNPTDCI TQYPISDAAD NSGEAGHLTD PTNAGGLDTT PIFSQSQPDD  480
FAIGFSDDVN PNASFDLYEK VDVKHGLFVS TVGAPKTFFH HVEPSKKVSF HLNPVASDVS  540
KAIEKFHFPI SVTTKVSGSS ISIFSKLKAL IRDKFLVKKL PSLSYQRSLS SKETAAASEL  600
LQIVSSLLLT PMEVTGPTTM TTEQELVKKA KKVMKPGPGC DGSHAWLLPF SKRSKGISSM  660
FFSGKWAFLT SALAIRTPGC NH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-55116212171NO APICAL MERISTEM PROTEIN
1ut4_B1e-55116212171NO APICAL MERISTEM PROTEIN
1ut7_A1e-55116212171NO APICAL MERISTEM PROTEIN
1ut7_B1e-55116212171NO APICAL MERISTEM PROTEIN
4dul_A1e-55116212171NAC domain-containing protein 19
4dul_B1e-55116212171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G529200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279780.0KJ727978.1 Zea mays clone pUT6092 NAC transcription factor (NAC78) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468623.10.0uncharacterized protein LOC8085734
TrEMBLC5X0Y20.0C5X0Y2_SORBI; Uncharacterized protein
STRINGSb01g049240.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66243651
Representative plantOGRP87171015
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-133NAC domain containing protein 28