PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G531100.1.p
Common NameSb01g049400, SORBIDRAFT_01g049400
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 211aa    MW: 21924.4 Da    PI: 5.338
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G531100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.41.3e-162777156
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                          + y+G+r++   g+Wv+eIr+p++   + r++lg++  +e+Aa+a++aa+++l+g+
  Sobic.001G531100.1.p 27 PVYRGIRYRG--GKWVSEIREPRK---SNRIWLGTYPAPEMAAAAYDAAALALRGA 77
                          68*****975..*********954...49************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.1E-112776IPR001471AP2/ERF domain
SMARTSM003802.9E-232890IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-262884IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-172884IPR016177DNA-binding domain
PROSITE profilePS5103219.6382884IPR001471AP2/ERF domain
PRINTSPR003672.3E-62940IPR001471AP2/ERF domain
CDDcd000181.51E-122984No hitNo description
PRINTSPR003672.3E-66686IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MEREQEQEAG TAQQLLGRRV RADTRHPVYR GIRYRGGKWV SEIREPRKSN RIWLGTYPAP  60
EMAAAAYDAA ALALRGAEAA LNFPGAAMSR PAPASCSPDD IRAAAAAAAA AVIGRSHSPQ  120
VGGEAAAGGG CGASTWSSGA GAQGQVPEHR AGDRRIVDED DVFQVPRLLA GMAEGLMMSP  180
PRLVGPATDG AVLLEEDGSE DGVVSLWDHS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G531100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468636.21e-148ethylene-responsive transcription factor ERF024
TrEMBLA0A1B6QQY61e-146A0A1B6QQY6_SORBI; Uncharacterized protein
STRINGSb01g049400.11e-146(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.18e-27ERF family protein